DNACompress: fast and effective DNA sequence compression

While achieving the best compression ratios for DNA sequences, our new DNACompress program significantly improves the running time of all previous DNA compression programs. Availability: http://dna.cs.ucsb.edu/DNACompress Contact: chxin@cs.ucsb.edumli@cs.ucsb.edu * To whom correspondence should be a...

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Veröffentlicht in:	Bioinformatics 2002-12, Vol.18 (12), p.1696-1698
Hauptverfasser:	Chen, Xin, Li, Ming, Ma, Bin, Tromp, John
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Biological and medical sciences Computing Methodologies Database Management Systems Databases, Nucleic Acid Fundamental and applied biological sciences. Psychology General aspects Humans Information Storage and Retrieval - methods Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Quality Control Repetitive Sequences, Nucleic Acid - genetics Sequence Analysis, DNA - methods Software
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Beschreibung
Zusammenfassung:	While achieving the best compression ratios for DNA sequences, our new DNACompress program significantly improves the running time of all previous DNA compression programs. Availability: http://dna.cs.ucsb.edu/DNACompress Contact: chxin@cs.ucsb.edumli@cs.ucsb.edu * To whom correspondence should be addressed.
ISSN:	1367-4803 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/18.12.1696