Chiral recognition in the binding of helicenediamine to double strand DNA: interactions between low molecular weight helical compounds and a helical polymer

Binding of a helicene, 5,8-bis(aminomethyl)-1,12-dimethylbenzo[ c]phenanthrene, to calf thymus DNA was studied using UV, CD, and fluorescence spectroscopy as well as calorimetry. The enantiomeric helicenes strongly bound to the double strand DNA possessing the right-handed helical structure. In addition, chiral recognition was observed in the binding, where the ( P)-helicene with the right-handed helicity formed more stable complex than the ( M)-helicene with the left-handed helicity. The binding studies of the helicenes and natural nucleosides by 1H NMR spectroscopy also revealed the higher affinity to the ( P)-helicene. Both monomeric and polymeric nucleic acids thus turned out to favor the ( P)-helicity. Graphic