PDB Goodies- a web-based GUI to manipulate the Protein Data Bank file

PDB Goodies is a web‐based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three‐dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three‐dimensional atomic coordinate file on their local client system. These fragments are used in various stages of structure elucidation and analysis. This software is incorporated with all the three‐dimensional protein structures available in the Protein Data Bank, which presently holds approximately 18 000 structures. In addition, this program works on a three‐dimensional atomic coordinate file (Protein Data Bank format) uploaded from the client machine. The program is written using CGI/PERL scripts and is platform independent. The program PDB Goodies can be accessed over the World Wide Web at http://144.16.71.11/pdbgoodies/.