RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree

*To whom correspondence should be addressed. 3Present address: Laboratoire de Biologie Moléculaire et Cellulaire, Ecole Normale Supérieure de Lyon, 6 allée d’Italie, 69364 Lyon cedex 07, France, marc.robinson@ens-lyon.fr Summary: RRTree is a user-friendly program for comparing substitution rates...

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Veröffentlicht in:	Bioinformatics 2000-03, Vol.16 (3), p.296-297
Hauptverfasser:	Robinson-Rechavi, Marc, Huchon, Dorothée
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Biological and medical sciences DNA - chemistry DNA sequencing Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Phylogeny Proteins - chemistry Sequence Analysis - methods Software
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Zusammenfassung:	*To whom correspondence should be addressed. 3Present address: Laboratoire de Biologie Moléculaire et Cellulaire, Ecole Normale Supérieure de Lyon, 6 allée d’Italie, 69364 Lyon cedex 07, France, marc.robinson@ens-lyon.fr Summary: RRTree is a user-friendly program for comparing substitution rates between lineages of protein or DNA sequences, relative to an outgroup, through relative rate tests. Genetic diversity is taken into account through use of several sequences, and phylogenetic relations are integrated by topological weighting. Availability: The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html Contact: marc.robinson@ens-lyon.fr
ISSN:	1367-4803 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/16.3.296