Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost
1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea 2 Department of Oriental Medicinal Materials and Processing, College of Life Science, Kyung Hee University, 1 Seocheon, Kihung Yongin, K...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-06, Vol.57 (6), p.1256-1260 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Kang, Myung-Suk Im, Wan-Taek Jung, Hae-Min Kim, Myung Kyum Goodfellow, Michael Kim, Kwang Kyu Yang, Hee-Chan An, Dong-Shan Lee, Sung-Taik |
| description | 1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Department of Oriental Medicinal Materials and Processing, College of Life Science, Kyung Hee University, 1 Seocheon, Kihung Yongin, Kyunggi 449-701, Republic of Korea
3 School of Biology, King George VI Building, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
4 Mount On Science Co. Ltd, Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
Correspondence Sung-Taik Lee e_stlee{at}kaist.ac.kr
A bacterial strain, TR7-06 T , which has cellulase and -glucosidase activities, was isolated from compost at a cattle farm near Daejeon, Republic of Korea. It was a Gram-positive, aerobic or facultatively anaerobic, non-motile, rod-shaped bacterium. Phylogenetic analysis based on 16S rRNA gene sequences showed that this strain belongs to the genus Cellulomonas , with highest sequence similarity to Cellulomonas uda DSM 20107 T (98.5 %). Cell wall analysis revealed the presence of type A4 , L -orn D -Glu peptidoglycan. The cell-wall sugars detected were mannose and glucose. The predominant menaquinone was MK-9(H 4 ); MK-8(H 4 ) was detected in smaller quantities. The major fatty acids were anteiso-C 15 : 0 , C 16 : 0 , C 14 : 0 and C 18 : 0 . The polar lipids detected were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The results of DNADNA hybridization and physiological and biochemical tests clearly demonstrated that TR7-06 T represents a novel species. The combined genotypic and phenotypic data show that strain TR7-06 T (=KCTC 19030 T =NBRC 100758 T ) merits description as the type strain of a novel Cellulomonas species, Cellulomonas composti sp. nov.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain TR7-06 T is AB166887 .
API ID32 test results for strain TR7-06 T and related Cellulomonas strains are available with the online version of this paper. |
| doi_str_mv | 10.1099/ijs.0.63974-0 |
| format | Article |
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2 Department of Oriental Medicinal Materials and Processing, College of Life Science, Kyung Hee University, 1 Seocheon, Kihung Yongin, Kyunggi 449-701, Republic of Korea
3 School of Biology, King George VI Building, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
4 Mount On Science Co. Ltd, Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
Correspondence Sung-Taik Lee e_stlee{at}kaist.ac.kr
A bacterial strain, TR7-06 T , which has cellulase and -glucosidase activities, was isolated from compost at a cattle farm near Daejeon, Republic of Korea. It was a Gram-positive, aerobic or facultatively anaerobic, non-motile, rod-shaped bacterium. Phylogenetic analysis based on 16S rRNA gene sequences showed that this strain belongs to the genus Cellulomonas , with highest sequence similarity to Cellulomonas uda DSM 20107 T (98.5 %). Cell wall analysis revealed the presence of type A4 , L -orn D -Glu peptidoglycan. The cell-wall sugars detected were mannose and glucose. The predominant menaquinone was MK-9(H 4 ); MK-8(H 4 ) was detected in smaller quantities. The major fatty acids were anteiso-C 15 : 0 , C 16 : 0 , C 14 : 0 and C 18 : 0 . The polar lipids detected were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The results of DNADNA hybridization and physiological and biochemical tests clearly demonstrated that TR7-06 T represents a novel species. The combined genotypic and phenotypic data show that strain TR7-06 T (=KCTC 19030 T =NBRC 100758 T ) merits description as the type strain of a novel Cellulomonas species, Cellulomonas composti sp. nov.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain TR7-06 T is AB166887 .
API ID32 test results for strain TR7-06 T and related Cellulomonas strains are available with the online version of this paper.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.63974-0</identifier><identifier>PMID: 17551039</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Aerobiosis ; Anaerobiosis ; Animals ; Bacterial Typing Techniques ; Bacteriology ; beta-Glucosidase - analysis ; Biological and medical sciences ; Carbohydrates - analysis ; Cattle ; Cell Wall - chemistry ; Cellulase - analysis ; Cellulomonas ; Cellulomonas - chemistry ; Cellulomonas - classification ; Cellulomonas - isolation & purification ; Cellulomonas - physiology ; Cellulomonas composti ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Korea ; Lipids - analysis ; Locomotion ; Microbiology ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Peptidoglycan - analysis ; Phylogeny ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; Soil Microbiology ; Systematics ; Vitamin K 2 - analysis</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-06, Vol.57 (6), p.1256-1260</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c521t-e0151823d4b73e943486a70e520af92e0c7b2c206d9aa8ec2bf5ba4a61ddc9d83</citedby><cites>FETCH-LOGICAL-c521t-e0151823d4b73e943486a70e520af92e0c7b2c206d9aa8ec2bf5ba4a61ddc9d83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3744,3745,27922,27923</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18849821$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17551039$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kang, Myung-Suk</creatorcontrib><creatorcontrib>Im, Wan-Taek</creatorcontrib><creatorcontrib>Jung, Hae-Min</creatorcontrib><creatorcontrib>Kim, Myung Kyum</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><creatorcontrib>Kim, Kwang Kyu</creatorcontrib><creatorcontrib>Yang, Hee-Chan</creatorcontrib><creatorcontrib>An, Dong-Shan</creatorcontrib><creatorcontrib>Lee, Sung-Taik</creatorcontrib><title>Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Department of Oriental Medicinal Materials and Processing, College of Life Science, Kyung Hee University, 1 Seocheon, Kihung Yongin, Kyunggi 449-701, Republic of Korea
3 School of Biology, King George VI Building, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
4 Mount On Science Co. Ltd, Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
Correspondence Sung-Taik Lee e_stlee{at}kaist.ac.kr
A bacterial strain, TR7-06 T , which has cellulase and -glucosidase activities, was isolated from compost at a cattle farm near Daejeon, Republic of Korea. It was a Gram-positive, aerobic or facultatively anaerobic, non-motile, rod-shaped bacterium. Phylogenetic analysis based on 16S rRNA gene sequences showed that this strain belongs to the genus Cellulomonas , with highest sequence similarity to Cellulomonas uda DSM 20107 T (98.5 %). Cell wall analysis revealed the presence of type A4 , L -orn D -Glu peptidoglycan. The cell-wall sugars detected were mannose and glucose. The predominant menaquinone was MK-9(H 4 ); MK-8(H 4 ) was detected in smaller quantities. The major fatty acids were anteiso-C 15 : 0 , C 16 : 0 , C 14 : 0 and C 18 : 0 . The polar lipids detected were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The results of DNADNA hybridization and physiological and biochemical tests clearly demonstrated that TR7-06 T represents a novel species. The combined genotypic and phenotypic data show that strain TR7-06 T (=KCTC 19030 T =NBRC 100758 T ) merits description as the type strain of a novel Cellulomonas species, Cellulomonas composti sp. nov.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain TR7-06 T is AB166887 .
API ID32 test results for strain TR7-06 T and related Cellulomonas strains are available with the online version of this paper.</description><subject>Aerobiosis</subject><subject>Anaerobiosis</subject><subject>Animals</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>beta-Glucosidase - analysis</subject><subject>Biological and medical sciences</subject><subject>Carbohydrates - analysis</subject><subject>Cattle</subject><subject>Cell Wall - chemistry</subject><subject>Cellulase - analysis</subject><subject>Cellulomonas</subject><subject>Cellulomonas - chemistry</subject><subject>Cellulomonas - classification</subject><subject>Cellulomonas - isolation & purification</subject><subject>Cellulomonas - physiology</subject><subject>Cellulomonas composti</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Korea</subject><subject>Lipids - analysis</subject><subject>Locomotion</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Peptidoglycan - analysis</subject><subject>Phylogeny</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Soil Microbiology</subject><subject>Systematics</subject><subject>Vitamin K 2 - analysis</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0T1v1TAYBWALgWgpjKzIC4iBhNeOP8fqii-pEgssLNYbx2ldxfHFTkD99-RyL3TsZMt6dHykQ8hLBi0Da9_H29pCqzqrRQOPyDkTSjUSOvH4_52rM_Ks1luA7QHgKTljWkoGnT0nP3ZhmtYppzxjpT6nfa5LpHXf0jn_at9RpP4oprsletqjX0KJa6Kx5gmXMNCx5EQ9LssU6Igl_Ut5Tp6MONXw4nRekO8fP3zbfW6uvn76sru8arzkbGkCMMkM7wbR6y5Y0QmjUEOQHHC0PIDXPfcc1GARTfC8H2WPAhUbBm8H012QN8fcfck_11AXl2I9lMY55LU6DVILLeBByMEIbjv1IGRWGSWl2GBzhL7kWksY3b7EhOXOMXCHedw2jwP3dx53aPDqFLz2KQz3-rTHBl6fAFaP01hw9rHeO2OENZxt7u3R3cTrm9-xBHcd5hS3Gn3Mh0-ldsoxLlX3B2Utpsg</recordid><startdate>20070601</startdate><enddate>20070601</enddate><creator>Kang, Myung-Suk</creator><creator>Im, Wan-Taek</creator><creator>Jung, Hae-Min</creator><creator>Kim, Myung Kyum</creator><creator>Goodfellow, Michael</creator><creator>Kim, Kwang Kyu</creator><creator>Yang, Hee-Chan</creator><creator>An, Dong-Shan</creator><creator>Lee, Sung-Taik</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20070601</creationdate><title>Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost</title><author>Kang, Myung-Suk ; Im, Wan-Taek ; Jung, Hae-Min ; Kim, Myung Kyum ; Goodfellow, Michael ; Kim, Kwang Kyu ; Yang, Hee-Chan ; An, Dong-Shan ; Lee, Sung-Taik</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c521t-e0151823d4b73e943486a70e520af92e0c7b2c206d9aa8ec2bf5ba4a61ddc9d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Aerobiosis</topic><topic>Anaerobiosis</topic><topic>Animals</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>beta-Glucosidase - analysis</topic><topic>Biological and medical sciences</topic><topic>Carbohydrates - analysis</topic><topic>Cattle</topic><topic>Cell Wall - chemistry</topic><topic>Cellulase - analysis</topic><topic>Cellulomonas</topic><topic>Cellulomonas - chemistry</topic><topic>Cellulomonas - classification</topic><topic>Cellulomonas - isolation & purification</topic><topic>Cellulomonas - physiology</topic><topic>Cellulomonas composti</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Korea</topic><topic>Lipids - analysis</topic><topic>Locomotion</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Hybridization</topic><topic>Peptidoglycan - analysis</topic><topic>Phylogeny</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Soil Microbiology</topic><topic>Systematics</topic><topic>Vitamin K 2 - analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kang, Myung-Suk</creatorcontrib><creatorcontrib>Im, Wan-Taek</creatorcontrib><creatorcontrib>Jung, Hae-Min</creatorcontrib><creatorcontrib>Kim, Myung Kyum</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><creatorcontrib>Kim, Kwang Kyu</creatorcontrib><creatorcontrib>Yang, Hee-Chan</creatorcontrib><creatorcontrib>An, Dong-Shan</creatorcontrib><creatorcontrib>Lee, Sung-Taik</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kang, Myung-Suk</au><au>Im, Wan-Taek</au><au>Jung, Hae-Min</au><au>Kim, Myung Kyum</au><au>Goodfellow, Michael</au><au>Kim, Kwang Kyu</au><au>Yang, Hee-Chan</au><au>An, Dong-Shan</au><au>Lee, Sung-Taik</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-06-01</date><risdate>2007</risdate><volume>57</volume><issue>6</issue><spage>1256</spage><epage>1260</epage><pages>1256-1260</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Department of Oriental Medicinal Materials and Processing, College of Life Science, Kyung Hee University, 1 Seocheon, Kihung Yongin, Kyunggi 449-701, Republic of Korea
3 School of Biology, King George VI Building, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
4 Mount On Science Co. Ltd, Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea
Correspondence Sung-Taik Lee e_stlee{at}kaist.ac.kr
A bacterial strain, TR7-06 T , which has cellulase and -glucosidase activities, was isolated from compost at a cattle farm near Daejeon, Republic of Korea. It was a Gram-positive, aerobic or facultatively anaerobic, non-motile, rod-shaped bacterium. Phylogenetic analysis based on 16S rRNA gene sequences showed that this strain belongs to the genus Cellulomonas , with highest sequence similarity to Cellulomonas uda DSM 20107 T (98.5 %). Cell wall analysis revealed the presence of type A4 , L -orn D -Glu peptidoglycan. The cell-wall sugars detected were mannose and glucose. The predominant menaquinone was MK-9(H 4 ); MK-8(H 4 ) was detected in smaller quantities. The major fatty acids were anteiso-C 15 : 0 , C 16 : 0 , C 14 : 0 and C 18 : 0 . The polar lipids detected were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The results of DNADNA hybridization and physiological and biochemical tests clearly demonstrated that TR7-06 T represents a novel species. The combined genotypic and phenotypic data show that strain TR7-06 T (=KCTC 19030 T =NBRC 100758 T ) merits description as the type strain of a novel Cellulomonas species, Cellulomonas composti sp. nov.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain TR7-06 T is AB166887 .
API ID32 test results for strain TR7-06 T and related Cellulomonas strains are available with the online version of this paper.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17551039</pmid><doi>10.1099/ijs.0.63974-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2007-06, Vol.57 (6), p.1256-1260 |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Aerobiosis Anaerobiosis Animals Bacterial Typing Techniques Bacteriology beta-Glucosidase - analysis Biological and medical sciences Carbohydrates - analysis Cattle Cell Wall - chemistry Cellulase - analysis Cellulomonas Cellulomonas - chemistry Cellulomonas - classification Cellulomonas - isolation & purification Cellulomonas - physiology Cellulomonas composti DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Genes, rRNA Korea Lipids - analysis Locomotion Microbiology Molecular Sequence Data Nucleic Acid Hybridization Peptidoglycan - analysis Phylogeny RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Sequence Homology, Nucleic Acid Soil Microbiology Systematics Vitamin K 2 - analysis |
| title | Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost |
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