Structure of a d(TGGGGT) quadruplex crystallized in the presence of Li+ ions

A parallel 5′‐d(TGGGGT)‐3′ quadruplex was formed in Na+ solution and crystallized using lithium sulfate as the main precipitating agent. The X‐ray structure was determined to 1.5 Å resolution in space group P21 by molecular replacement. The asymmetric unit consists of a characteristic motif of two q...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2007-06, Vol.63 (6), p.682-688
Hauptverfasser: Creze, Christophe, Rinaldi, Bruno, Haser, Richard, Bouvet, Philippe, Gouet, Patrice
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:A parallel 5′‐d(TGGGGT)‐3′ quadruplex was formed in Na+ solution and crystallized using lithium sulfate as the main precipitating agent. The X‐ray structure was determined to 1.5 Å resolution in space group P21 by molecular replacement. The asymmetric unit consists of a characteristic motif of two quadruplexes stacked at their 5′ ends. All nucleotides are clearly defined in the density and could be positioned. A single bound Li+ ion is observed at the surface of the column formed by the two joined molecules. Thus, this small alkali metal ion appears to be unsuitable as a replacement for the Na+ ion in the central channel of G‐quartets, unlike K+ or Tl+ ions. A well conserved constellation of water molecules is observed in the grooves of the dimeric structure.
ISSN:1399-0047
0907-4449
1399-0047
DOI:10.1107/S0907444907013315