NetMatch: a Cytoscape plugin for searching biological networks

NetMatch is a Cytoscape plugin which allows searching biological networks for subcomponents matching a given query. Queries may be approximate in the sense that certain parts of the subgraph-query may be left unspecified. To make the query creation process easy, a drawing tool is provided. Cytoscape...

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Veröffentlicht in:	Bioinformatics 2007-04, Vol.23 (7), p.910-912
Hauptverfasser:	Ferro, A., Giugno, R., Pigola, G., Pulvirenti, A., Skripin, D., Bader, G. D., Shasha, D.
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Biological and medical sciences Computer Graphics Computer Simulation Database Management Systems Fundamental and applied biological sciences. Psychology General aspects Information Storage and Retrieval - methods Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Models, Biological Signal Transduction - physiology Software User-Computer Interface
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Beschreibung
Zusammenfassung:	NetMatch is a Cytoscape plugin which allows searching biological networks for subcomponents matching a given query. Queries may be approximate in the sense that certain parts of the subgraph-query may be left unspecified. To make the query creation process easy, a drawing tool is provided. Cytoscape is a bioinformatics software platform for the visualization and analysis of biological networks. Availability: The full package, a tutorial and associated examples are available at the following web sites: http://alpha.dmi.unict.it/~ctnyu/netmatch.html, http://baderlab.org/Software/NetMatch Contact: ferro@dmi.unict.it
ISSN:	1367-4803 1367-4811 1460-2059
DOI:	10.1093/bioinformatics/btm032