Oligothiophene Molecular Beacons
Oligomers of thiophene are widely studied compounds for their electronic and optoelectronic properties. Despite their strong fluorescence, their use as markers for biomolecules, especially for oligonucleotides (ONs), is still largely unexplored. Here, we describe the synthesis of a series of ON mole...
Gespeichert in:
Veröffentlicht in: | Bioconjugate chemistry 2007-03, Vol.18 (2), p.318-322 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 322 |
---|---|
container_issue | 2 |
container_start_page | 318 |
container_title | Bioconjugate chemistry |
container_volume | 18 |
creator | Cazzato, Antonella Capobianco, Massimo L Zambianchi, Massimo Favaretto, Laura Bettini, Cristian Barbarella, Giovanna |
description | Oligomers of thiophene are widely studied compounds for their electronic and optoelectronic properties. Despite their strong fluorescence, their use as markers for biomolecules, especially for oligonucleotides (ONs), is still largely unexplored. Here, we describe the synthesis of a series of ON molecular beacons employing different oligothiophenes as fluorescent probes and discuss their fluorescence emissions in comparative experiments with and without dabcyl as a quencher, in their hairpin and linear conformations, and as duplexes after hybridization with a complementary target. |
doi_str_mv | 10.1021/bc060169n |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_70297219</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1243562641</sourcerecordid><originalsourceid>FETCH-LOGICAL-a378t-1f015613bd86ea1efb864b560d0fc475fb811986e18df376f58effadef7bcc173</originalsourceid><addsrcrecordid>eNpl0F1LwzAUBuAgitPphX9AhqDgRfWctE3aSx06PyabOG-8CWmauM6unUkL-u-NbGygV0k4DycvLyFHCBcIFC8zBQyQpdUW2cOYQhAlSLf9HaIwwARoh-w7NwOAFBO6SzrIQwDksEd6o7J4r5tpUS-mutK9p7rUqi2l7V1rqerKHZAdI0unD1dnl7ze3kz6d8FwNLjvXw0DGfKkCdAAxgzDLE-YlqhNlrAoixnkYFTEY_9GTP0Mk9yEnJk40cbIXBueKeXzdMnZcu_C1p-tdo2YF07pspSVrlsnONCUU0w9PPkDZ3VrK59NUGTUszjy6HyJlK2ds9qIhS3m0n4LBPHbmVh35u3xamGbzXW-kauSPAiWoHCN_lrPpf0QjIc8FpPxixi_PT6Mo-e-GHh_uvRSuU24_x__AC4tgAQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>216202954</pqid></control><display><type>article</type><title>Oligothiophene Molecular Beacons</title><source>MEDLINE</source><source>ACS Publications</source><creator>Cazzato, Antonella ; Capobianco, Massimo L ; Zambianchi, Massimo ; Favaretto, Laura ; Bettini, Cristian ; Barbarella, Giovanna</creator><creatorcontrib>Cazzato, Antonella ; Capobianco, Massimo L ; Zambianchi, Massimo ; Favaretto, Laura ; Bettini, Cristian ; Barbarella, Giovanna</creatorcontrib><description>Oligomers of thiophene are widely studied compounds for their electronic and optoelectronic properties. Despite their strong fluorescence, their use as markers for biomolecules, especially for oligonucleotides (ONs), is still largely unexplored. Here, we describe the synthesis of a series of ON molecular beacons employing different oligothiophenes as fluorescent probes and discuss their fluorescence emissions in comparative experiments with and without dabcyl as a quencher, in their hairpin and linear conformations, and as duplexes after hybridization with a complementary target.</description><identifier>ISSN: 1043-1802</identifier><identifier>EISSN: 1520-4812</identifier><identifier>DOI: 10.1021/bc060169n</identifier><identifier>PMID: 17300170</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Biochemistry ; Chemical compounds ; Comparative analysis ; Electric properties ; Fluorescence ; Fluorescent Dyes - chemistry ; Fluorescent Dyes - metabolism ; Hybridization ; Models, Molecular ; Molecules ; Nucleic Acid Conformation ; Nucleic Acid Hybridization ; Oligonucleotide Probes - chemistry ; Oligonucleotide Probes - metabolism ; Oligonucleotides - chemistry ; Spectrometry, Fluorescence ; Thiophenes - chemistry ; Thiophenes - metabolism</subject><ispartof>Bioconjugate chemistry, 2007-03, Vol.18 (2), p.318-322</ispartof><rights>Copyright © 2007 American Chemical Society</rights><rights>Copyright American Chemical Society Mar 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a378t-1f015613bd86ea1efb864b560d0fc475fb811986e18df376f58effadef7bcc173</citedby><cites>FETCH-LOGICAL-a378t-1f015613bd86ea1efb864b560d0fc475fb811986e18df376f58effadef7bcc173</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/bc060169n$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/bc060169n$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2763,27075,27923,27924,56737,56787</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17300170$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cazzato, Antonella</creatorcontrib><creatorcontrib>Capobianco, Massimo L</creatorcontrib><creatorcontrib>Zambianchi, Massimo</creatorcontrib><creatorcontrib>Favaretto, Laura</creatorcontrib><creatorcontrib>Bettini, Cristian</creatorcontrib><creatorcontrib>Barbarella, Giovanna</creatorcontrib><title>Oligothiophene Molecular Beacons</title><title>Bioconjugate chemistry</title><addtitle>Bioconjugate Chem</addtitle><description>Oligomers of thiophene are widely studied compounds for their electronic and optoelectronic properties. Despite their strong fluorescence, their use as markers for biomolecules, especially for oligonucleotides (ONs), is still largely unexplored. Here, we describe the synthesis of a series of ON molecular beacons employing different oligothiophenes as fluorescent probes and discuss their fluorescence emissions in comparative experiments with and without dabcyl as a quencher, in their hairpin and linear conformations, and as duplexes after hybridization with a complementary target.</description><subject>Biochemistry</subject><subject>Chemical compounds</subject><subject>Comparative analysis</subject><subject>Electric properties</subject><subject>Fluorescence</subject><subject>Fluorescent Dyes - chemistry</subject><subject>Fluorescent Dyes - metabolism</subject><subject>Hybridization</subject><subject>Models, Molecular</subject><subject>Molecules</subject><subject>Nucleic Acid Conformation</subject><subject>Nucleic Acid Hybridization</subject><subject>Oligonucleotide Probes - chemistry</subject><subject>Oligonucleotide Probes - metabolism</subject><subject>Oligonucleotides - chemistry</subject><subject>Spectrometry, Fluorescence</subject><subject>Thiophenes - chemistry</subject><subject>Thiophenes - metabolism</subject><issn>1043-1802</issn><issn>1520-4812</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpl0F1LwzAUBuAgitPphX9AhqDgRfWctE3aSx06PyabOG-8CWmauM6unUkL-u-NbGygV0k4DycvLyFHCBcIFC8zBQyQpdUW2cOYQhAlSLf9HaIwwARoh-w7NwOAFBO6SzrIQwDksEd6o7J4r5tpUS-mutK9p7rUqi2l7V1rqerKHZAdI0unD1dnl7ze3kz6d8FwNLjvXw0DGfKkCdAAxgzDLE-YlqhNlrAoixnkYFTEY_9GTP0Mk9yEnJk40cbIXBueKeXzdMnZcu_C1p-tdo2YF07pspSVrlsnONCUU0w9PPkDZ3VrK59NUGTUszjy6HyJlK2ds9qIhS3m0n4LBPHbmVh35u3xamGbzXW-kauSPAiWoHCN_lrPpf0QjIc8FpPxixi_PT6Mo-e-GHh_uvRSuU24_x__AC4tgAQ</recordid><startdate>20070301</startdate><enddate>20070301</enddate><creator>Cazzato, Antonella</creator><creator>Capobianco, Massimo L</creator><creator>Zambianchi, Massimo</creator><creator>Favaretto, Laura</creator><creator>Bettini, Cristian</creator><creator>Barbarella, Giovanna</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20070301</creationdate><title>Oligothiophene Molecular Beacons</title><author>Cazzato, Antonella ; Capobianco, Massimo L ; Zambianchi, Massimo ; Favaretto, Laura ; Bettini, Cristian ; Barbarella, Giovanna</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a378t-1f015613bd86ea1efb864b560d0fc475fb811986e18df376f58effadef7bcc173</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Biochemistry</topic><topic>Chemical compounds</topic><topic>Comparative analysis</topic><topic>Electric properties</topic><topic>Fluorescence</topic><topic>Fluorescent Dyes - chemistry</topic><topic>Fluorescent Dyes - metabolism</topic><topic>Hybridization</topic><topic>Models, Molecular</topic><topic>Molecules</topic><topic>Nucleic Acid Conformation</topic><topic>Nucleic Acid Hybridization</topic><topic>Oligonucleotide Probes - chemistry</topic><topic>Oligonucleotide Probes - metabolism</topic><topic>Oligonucleotides - chemistry</topic><topic>Spectrometry, Fluorescence</topic><topic>Thiophenes - chemistry</topic><topic>Thiophenes - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cazzato, Antonella</creatorcontrib><creatorcontrib>Capobianco, Massimo L</creatorcontrib><creatorcontrib>Zambianchi, Massimo</creatorcontrib><creatorcontrib>Favaretto, Laura</creatorcontrib><creatorcontrib>Bettini, Cristian</creatorcontrib><creatorcontrib>Barbarella, Giovanna</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Bioconjugate chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cazzato, Antonella</au><au>Capobianco, Massimo L</au><au>Zambianchi, Massimo</au><au>Favaretto, Laura</au><au>Bettini, Cristian</au><au>Barbarella, Giovanna</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Oligothiophene Molecular Beacons</atitle><jtitle>Bioconjugate chemistry</jtitle><addtitle>Bioconjugate Chem</addtitle><date>2007-03-01</date><risdate>2007</risdate><volume>18</volume><issue>2</issue><spage>318</spage><epage>322</epage><pages>318-322</pages><issn>1043-1802</issn><eissn>1520-4812</eissn><abstract>Oligomers of thiophene are widely studied compounds for their electronic and optoelectronic properties. Despite their strong fluorescence, their use as markers for biomolecules, especially for oligonucleotides (ONs), is still largely unexplored. Here, we describe the synthesis of a series of ON molecular beacons employing different oligothiophenes as fluorescent probes and discuss their fluorescence emissions in comparative experiments with and without dabcyl as a quencher, in their hairpin and linear conformations, and as duplexes after hybridization with a complementary target.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>17300170</pmid><doi>10.1021/bc060169n</doi><tpages>5</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1043-1802 |
ispartof | Bioconjugate chemistry, 2007-03, Vol.18 (2), p.318-322 |
issn | 1043-1802 1520-4812 |
language | eng |
recordid | cdi_proquest_miscellaneous_70297219 |
source | MEDLINE; ACS Publications |
subjects | Biochemistry Chemical compounds Comparative analysis Electric properties Fluorescence Fluorescent Dyes - chemistry Fluorescent Dyes - metabolism Hybridization Models, Molecular Molecules Nucleic Acid Conformation Nucleic Acid Hybridization Oligonucleotide Probes - chemistry Oligonucleotide Probes - metabolism Oligonucleotides - chemistry Spectrometry, Fluorescence Thiophenes - chemistry Thiophenes - metabolism |
title | Oligothiophene Molecular Beacons |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T13%3A19%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Oligothiophene%20Molecular%20Beacons&rft.jtitle=Bioconjugate%20chemistry&rft.au=Cazzato,%20Antonella&rft.date=2007-03-01&rft.volume=18&rft.issue=2&rft.spage=318&rft.epage=322&rft.pages=318-322&rft.issn=1043-1802&rft.eissn=1520-4812&rft_id=info:doi/10.1021/bc060169n&rft_dat=%3Cproquest_cross%3E1243562641%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=216202954&rft_id=info:pmid/17300170&rfr_iscdi=true |