Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine
1 Yunnan Institute of Microbiology, Yunnan University, Kunming, Yunnan 650091, PR China 2 College of Bio-resources and Environmental Science, Jishou University, Jishou, Hunan 416000, PR China 3 Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chin...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2009-09, Vol.59 (9), p.2185-2190 |
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| creator | Wang, Zhi-Gang Wang, Yong-Xia Liu, Ji-Hui Chen, Yi-Guang Zhang, Xiao-Xia Wen, Meng-Liang Xu, Li-Hua Peng, Qian Cui, Xiao-Long |
| description | 1 Yunnan Institute of Microbiology, Yunnan University, Kunming, Yunnan 650091, PR China
2 College of Bio-resources and Environmental Science, Jishou University, Jishou, Hunan 416000, PR China
3 Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100080, PR China
Correspondence Xiao-Long Cui xlcui{at}ynu.edu.cn
A Gram-positive-staining, aerobic, catalase- and oxidase-positive, irregular short rod-shaped actinobacterium, designated strain YIM C003 T , was isolated from a salt mine in Yunnan, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM C003 T was most closely related to strains of the genera Knoellia (94.2–96.0 % similarity), Oryzihumus (95.6 %), Terrabacter (94.9–95.4 %), Janibacter (94.9–95.4 %), Kribbia (95.0 %), Lapillicoccus (95.0 %) and Phycicoccus (94.2–95.0 %) of the family Intrasporangiaceae and that it formed an independent monophyletic lineage with three strains of Oryzihumus leptocrescens . The DNA G+C content of strain YIM C003 T was 72.0 mol%. The diagnostic cell-wall diamino acid was meso -diaminopimelic acid. The predominant menaquinone was MK-8(H 4 ). Mycolic acids were not detected. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and two unknown phospholipids. The major cellular fatty acids were C 18 : 1 9 c and C 16 : 0 . These chemotaxonomic properties, together with data from phylogenetic analysis, enabled the novel isolate to be differentiated from all other members of the family. A novel species in a new genus, Fodinibacter luteus gen. nov., sp. nov., is proposed, with strain YIM C003 T (=DSM 21208 T =CCTCC AA 208036 T ) as the type strain of Fodinibacter luteus .
Abbreviations: DAP, diaminopimelic acid
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain YIM C003 T is EU878005 .
A transmission electron micrograph of cells of strain YIM C003 T is available as supplementary material with the online version of this paper. |
| doi_str_mv | 10.1099/ijs.0.006882-0 |
| format | Article |
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2 College of Bio-resources and Environmental Science, Jishou University, Jishou, Hunan 416000, PR China
3 Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100080, PR China
Correspondence Xiao-Long Cui xlcui{at}ynu.edu.cn
A Gram-positive-staining, aerobic, catalase- and oxidase-positive, irregular short rod-shaped actinobacterium, designated strain YIM C003 T , was isolated from a salt mine in Yunnan, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM C003 T was most closely related to strains of the genera Knoellia (94.2–96.0 % similarity), Oryzihumus (95.6 %), Terrabacter (94.9–95.4 %), Janibacter (94.9–95.4 %), Kribbia (95.0 %), Lapillicoccus (95.0 %) and Phycicoccus (94.2–95.0 %) of the family Intrasporangiaceae and that it formed an independent monophyletic lineage with three strains of Oryzihumus leptocrescens . The DNA G+C content of strain YIM C003 T was 72.0 mol%. The diagnostic cell-wall diamino acid was meso -diaminopimelic acid. The predominant menaquinone was MK-8(H 4 ). Mycolic acids were not detected. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and two unknown phospholipids. The major cellular fatty acids were C 18 : 1 9 c and C 16 : 0 . These chemotaxonomic properties, together with data from phylogenetic analysis, enabled the novel isolate to be differentiated from all other members of the family. A novel species in a new genus, Fodinibacter luteus gen. nov., sp. nov., is proposed, with strain YIM C003 T (=DSM 21208 T =CCTCC AA 208036 T ) as the type strain of Fodinibacter luteus .
Abbreviations: DAP, diaminopimelic acid
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain YIM C003 T is EU878005 .
A transmission electron micrograph of cells of strain YIM C003 T is available as supplementary material with the online version of this paper.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.006882-0</identifier><identifier>PMID: 19605729</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Actinomycetales - classification ; Actinomycetales - genetics ; Actinomycetales - isolation & purification ; Actinomycetales - physiology ; Aerobiosis ; Bacteriology ; Base Composition ; Biological and medical sciences ; Catalase - metabolism ; Cell Wall - chemistry ; China ; Cluster Analysis ; Diaminopimelic Acid - analysis ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Microbiology ; Molecular Sequence Data ; Oxidoreductases - metabolism ; Phospholipids - analysis ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Systematics ; Terrabacter ; Vitamin K 2 - analysis</subject><ispartof>International journal of systematic and evolutionary microbiology, 2009-09, Vol.59 (9), p.2185-2190</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c427t-3fce13c7fac87e491364ae56208725e23bb9bd09d7c58ebe4febc419d4e94e183</citedby><cites>FETCH-LOGICAL-c427t-3fce13c7fac87e491364ae56208725e23bb9bd09d7c58ebe4febc419d4e94e183</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21964664$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19605729$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Zhi-Gang</creatorcontrib><creatorcontrib>Wang, Yong-Xia</creatorcontrib><creatorcontrib>Liu, Ji-Hui</creatorcontrib><creatorcontrib>Chen, Yi-Guang</creatorcontrib><creatorcontrib>Zhang, Xiao-Xia</creatorcontrib><creatorcontrib>Wen, Meng-Liang</creatorcontrib><creatorcontrib>Xu, Li-Hua</creatorcontrib><creatorcontrib>Peng, Qian</creatorcontrib><creatorcontrib>Cui, Xiao-Long</creatorcontrib><title>Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Yunnan Institute of Microbiology, Yunnan University, Kunming, Yunnan 650091, PR China
2 College of Bio-resources and Environmental Science, Jishou University, Jishou, Hunan 416000, PR China
3 Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100080, PR China
Correspondence Xiao-Long Cui xlcui{at}ynu.edu.cn
A Gram-positive-staining, aerobic, catalase- and oxidase-positive, irregular short rod-shaped actinobacterium, designated strain YIM C003 T , was isolated from a salt mine in Yunnan, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM C003 T was most closely related to strains of the genera Knoellia (94.2–96.0 % similarity), Oryzihumus (95.6 %), Terrabacter (94.9–95.4 %), Janibacter (94.9–95.4 %), Kribbia (95.0 %), Lapillicoccus (95.0 %) and Phycicoccus (94.2–95.0 %) of the family Intrasporangiaceae and that it formed an independent monophyletic lineage with three strains of Oryzihumus leptocrescens . The DNA G+C content of strain YIM C003 T was 72.0 mol%. The diagnostic cell-wall diamino acid was meso -diaminopimelic acid. The predominant menaquinone was MK-8(H 4 ). Mycolic acids were not detected. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and two unknown phospholipids. The major cellular fatty acids were C 18 : 1 9 c and C 16 : 0 . These chemotaxonomic properties, together with data from phylogenetic analysis, enabled the novel isolate to be differentiated from all other members of the family. A novel species in a new genus, Fodinibacter luteus gen. nov., sp. nov., is proposed, with strain YIM C003 T (=DSM 21208 T =CCTCC AA 208036 T ) as the type strain of Fodinibacter luteus .
Abbreviations: DAP, diaminopimelic acid
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain YIM C003 T is EU878005 .
A transmission electron micrograph of cells of strain YIM C003 T is available as supplementary material with the online version of this paper.</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - isolation & purification</subject><subject>Actinomycetales - physiology</subject><subject>Aerobiosis</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Catalase - metabolism</subject><subject>Cell Wall - chemistry</subject><subject>China</subject><subject>Cluster Analysis</subject><subject>Diaminopimelic Acid - analysis</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Oxidoreductases - metabolism</subject><subject>Phospholipids - analysis</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Systematics</subject><subject>Terrabacter</subject><subject>Vitamin K 2 - analysis</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0b1P3jAQB-Cooiof7cpYeQExkPT8ETseEeKjEhILnS3HuYBREr-1ExD_PUZ5gZHJJ-vxnfW7ojikUFHQ-o9_TBVUALJpWAnfij0qpCxr4GLno2Zyt9hP6REgXwD8KHapllArpveKf5eh85NvrZsxkmGZcUnkHqeKTOGpOiVp817ZiWTkp7Bav4zEpzDYGTvSxzASS5IdZjL6CX8W33s7JPy1PQ_ynIu78-vy5vbq7_nZTekEU3PJe4eUO9Vb1ygUmnIpLNaSQaNYjYy3rW470J1ydYMtih5bJ6juBGqBtOEHxfHadxPD_wXTbEafHA6DnTAsyUgluVKcfgkZ6Jo3WmVYrdDFkFLE3myiH218MRTMW-ImJ27ArIkbyA9-bzsv7YjdJ99GnMHRFtjk7NBHOzmfPhzLMK9JZHeyugd___DsI5q8htHnf7Q-vE2ttdGZNzV_BTVSluw</recordid><startdate>20090901</startdate><enddate>20090901</enddate><creator>Wang, Zhi-Gang</creator><creator>Wang, Yong-Xia</creator><creator>Liu, Ji-Hui</creator><creator>Chen, Yi-Guang</creator><creator>Zhang, Xiao-Xia</creator><creator>Wen, Meng-Liang</creator><creator>Xu, Li-Hua</creator><creator>Peng, Qian</creator><creator>Cui, Xiao-Long</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20090901</creationdate><title>Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine</title><author>Wang, Zhi-Gang ; Wang, Yong-Xia ; Liu, Ji-Hui ; Chen, Yi-Guang ; Zhang, Xiao-Xia ; Wen, Meng-Liang ; Xu, Li-Hua ; Peng, Qian ; Cui, Xiao-Long</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c427t-3fce13c7fac87e491364ae56208725e23bb9bd09d7c58ebe4febc419d4e94e183</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - isolation & purification</topic><topic>Actinomycetales - physiology</topic><topic>Aerobiosis</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Catalase - metabolism</topic><topic>Cell Wall - chemistry</topic><topic>China</topic><topic>Cluster Analysis</topic><topic>Diaminopimelic Acid - analysis</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Oxidoreductases - metabolism</topic><topic>Phospholipids - analysis</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Systematics</topic><topic>Terrabacter</topic><topic>Vitamin K 2 - analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Zhi-Gang</creatorcontrib><creatorcontrib>Wang, Yong-Xia</creatorcontrib><creatorcontrib>Liu, Ji-Hui</creatorcontrib><creatorcontrib>Chen, Yi-Guang</creatorcontrib><creatorcontrib>Zhang, Xiao-Xia</creatorcontrib><creatorcontrib>Wen, Meng-Liang</creatorcontrib><creatorcontrib>Xu, Li-Hua</creatorcontrib><creatorcontrib>Peng, Qian</creatorcontrib><creatorcontrib>Cui, Xiao-Long</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Zhi-Gang</au><au>Wang, Yong-Xia</au><au>Liu, Ji-Hui</au><au>Chen, Yi-Guang</au><au>Zhang, Xiao-Xia</au><au>Wen, Meng-Liang</au><au>Xu, Li-Hua</au><au>Peng, Qian</au><au>Cui, Xiao-Long</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2009-09-01</date><risdate>2009</risdate><volume>59</volume><issue>9</issue><spage>2185</spage><epage>2190</epage><pages>2185-2190</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Yunnan Institute of Microbiology, Yunnan University, Kunming, Yunnan 650091, PR China
2 College of Bio-resources and Environmental Science, Jishou University, Jishou, Hunan 416000, PR China
3 Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100080, PR China
Correspondence Xiao-Long Cui xlcui{at}ynu.edu.cn
A Gram-positive-staining, aerobic, catalase- and oxidase-positive, irregular short rod-shaped actinobacterium, designated strain YIM C003 T , was isolated from a salt mine in Yunnan, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM C003 T was most closely related to strains of the genera Knoellia (94.2–96.0 % similarity), Oryzihumus (95.6 %), Terrabacter (94.9–95.4 %), Janibacter (94.9–95.4 %), Kribbia (95.0 %), Lapillicoccus (95.0 %) and Phycicoccus (94.2–95.0 %) of the family Intrasporangiaceae and that it formed an independent monophyletic lineage with three strains of Oryzihumus leptocrescens . The DNA G+C content of strain YIM C003 T was 72.0 mol%. The diagnostic cell-wall diamino acid was meso -diaminopimelic acid. The predominant menaquinone was MK-8(H 4 ). Mycolic acids were not detected. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and two unknown phospholipids. The major cellular fatty acids were C 18 : 1 9 c and C 16 : 0 . These chemotaxonomic properties, together with data from phylogenetic analysis, enabled the novel isolate to be differentiated from all other members of the family. A novel species in a new genus, Fodinibacter luteus gen. nov., sp. nov., is proposed, with strain YIM C003 T (=DSM 21208 T =CCTCC AA 208036 T ) as the type strain of Fodinibacter luteus .
Abbreviations: DAP, diaminopimelic acid
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain YIM C003 T is EU878005 .
A transmission electron micrograph of cells of strain YIM C003 T is available as supplementary material with the online version of this paper.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>19605729</pmid><doi>10.1099/ijs.0.006882-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Actinomycetales - classification Actinomycetales - genetics Actinomycetales - isolation & purification Actinomycetales - physiology Aerobiosis Bacteriology Base Composition Biological and medical sciences Catalase - metabolism Cell Wall - chemistry China Cluster Analysis Diaminopimelic Acid - analysis DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Microbiology Molecular Sequence Data Oxidoreductases - metabolism Phospholipids - analysis Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Systematics Terrabacter Vitamin K 2 - analysis |
| title | Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine |
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