CGH-Explorer: a program for analysis of array-CGH data

CGH-Explorer is a program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing facilities, tools for graphical exploration of individual arrays or groups of arrays, and tools for statistical identification of...

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Veröffentlicht in:	Bioinformatics 2005-03, Vol.21 (6), p.821-822
Hauptverfasser:	Lingjærde, Ole Christian, Baumbusch, Lars O., Liestøl, Knut, Glad, Ingrid K., Børresen-Dale, Anne-Lise
Format:	Artikel
Sprache:	eng
Schlagworte:	Biological and medical sciences Computer Graphics DNA Mutational Analysis - methods Fundamental and applied biological sciences. Psychology Gene Dosage Gene Expression Profiling - methods General aspects Genetic Variation - genetics In Situ Hybridization - methods Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Oligonucleotide Array Sequence Analysis - methods Sequence Analysis, DNA - methods Software User-Computer Interface
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Beschreibung
Zusammenfassung:	CGH-Explorer is a program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing facilities, tools for graphical exploration of individual arrays or groups of arrays, and tools for statistical identification of regions of amplification and deletion. Availability: The program is available as Java class files that runs on any platform with the Java 2 runtime environment (J2SE JRE) installed, and as a Windows executable. Java source files are also available. See http://www.ifi.uio.no/bioinf/Papers/CGH/ Contact: ole@ifi.uio.no
ISSN:	1367-4803 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/bti113