HumanMSD and MouseMSD: generating genetic maps for human and murine microsatellite markers

We present two Web interfaces that generate genetic maps for given sets of human or mouse microsatellite markers. The genetic maps are generated from available databases using linear interpolation of physical map distances to infer genetic map positions for missing markers in these databases. Availa...

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Veröffentlicht in:	Bioinformatics 2004-11, Vol.20 (17), p.3280-3283
Hauptverfasser:	Bahlo, M., Xing, L., Wilkinson, C. R.
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Animals Biological and medical sciences Chromosome Mapping - methods Computer Graphics Database Management Systems Fundamental and applied biological sciences. Psychology General aspects Information Storage and Retrieval - methods Internet Linkage Disequilibrium Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Mice Microsatellite Repeats - genetics Software User-Computer Interface
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Beschreibung
Zusammenfassung:	We present two Web interfaces that generate genetic maps for given sets of human or mouse microsatellite markers. The genetic maps are generated from available databases using linear interpolation of physical map distances to infer genetic map positions for missing markers in these databases. Availability: http://bioinf.wehi.edu.au/software/MarkerSearch Supplementary information: http://bioinf.wehi.edu.au/genetics/index.html (further information about microsatellite markers and linkage mapping). http://bioinf.wehi.edu.au/software/MarkerSearch/estimateresult.txt (list of chosen markers with percentage errors for the different bins).
ISSN:	1367-4803 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/bth375