Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus
1 Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Prospekt 100 Let Vladivostoku 159, 690022 Vladivostok, Russia 2 Tokyo Research Laboratories, Kyowa Hakko Kogyo Co. Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan 3 BCCM/LMG Bacteria...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2004-07, Vol.54 (4), p.1107-1110 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Nedashkovskaya, Olga I Suzuki, Makoto Vancanneyt, Marc Cleenwerck, Ilse Zhukova, Natalia V Vysotskii, Mikhail V Mikhailov, Valery V Swings, Jean |
| description | 1 Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Prospekt 100 Let Vladivostoku 159, 690022 Vladivostok, Russia
2 Tokyo Research Laboratories, Kyowa Hakko Kogyo Co. Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan
3 BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium
4 Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences, Pal'chevskogo Street 17, 690032 Vladivostok, Russia
Correspondence Olga I. Nedashkovskaya olganedashkovska{at}piboc.dvo.ru
Strain KMM 3524 T was isolated from the holothurian Apostichopus japonicus living in the Sea of Japan. The bacterial strain was pigmented, non-motile, Gram-negative, strictly aerobic and oxidase-, catalase- and -galactosidase-positive. From the results of 16S rDNA sequence analysis, strain KMM 3524 T was found to be related closely to Salegentibacter salegens (98·1 %). DNADNA homology between strains KMM 3524 T and S. salegens DSM 5424 T was 38 %; this showed clearly that the holothurian isolate KMM 3524 T belongs to a novel species of the genus Salegentibacter for which the name Salegentibacter holothuriorum sp. nov. is proposed, with KMM 3524 T (=NBRC 100249 T =LMG 21968 T ) as the type strain.
Published online ahead of print on 9 January 2004 as DOI 10.1099/ijs.0.02987-0.
The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of Salegentibacter holothuriorum KMM 3524 T is AB116148 . |
| doi_str_mv | 10.1099/ijs.0.02987-0 |
| format | Article |
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2 Tokyo Research Laboratories, Kyowa Hakko Kogyo Co. Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan
3 BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium
4 Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences, Pal'chevskogo Street 17, 690032 Vladivostok, Russia
Correspondence Olga I. Nedashkovskaya olganedashkovska{at}piboc.dvo.ru
Strain KMM 3524 T was isolated from the holothurian Apostichopus japonicus living in the Sea of Japan. The bacterial strain was pigmented, non-motile, Gram-negative, strictly aerobic and oxidase-, catalase- and -galactosidase-positive. From the results of 16S rDNA sequence analysis, strain KMM 3524 T was found to be related closely to Salegentibacter salegens (98·1 %). DNADNA homology between strains KMM 3524 T and S. salegens DSM 5424 T was 38 %; this showed clearly that the holothurian isolate KMM 3524 T belongs to a novel species of the genus Salegentibacter for which the name Salegentibacter holothuriorum sp. nov. is proposed, with KMM 3524 T (=NBRC 100249 T =LMG 21968 T ) as the type strain.
Published online ahead of print on 9 January 2004 as DOI 10.1099/ijs.0.02987-0.
The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of Salegentibacter holothuriorum KMM 3524 T is AB116148 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.02987-0</identifier><identifier>PMID: 15280277</identifier><language>eng</language><publisher>England: Soc General Microbiol</publisher><subject>Aerobiosis ; Animals ; Apostichopus japonicus ; beta-Galactosidase - metabolism ; Catalase - metabolism ; DNA, Bacterial - chemistry ; DNA, Bacterial - isolation & purification ; DNA, Ribosomal - chemistry ; Flavobacteriaceae - classification ; Flavobacteriaceae - cytology ; Flavobacteriaceae - isolation & purification ; Flavobacteriaceae - physiology ; Genes, rRNA ; Gentian Violet ; Marine ; Molecular Sequence Data ; Movement ; Oxidoreductases - metabolism ; Pacific Ocean ; Phenazines ; Phylogeny ; Pigments, Biological - biosynthesis ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Salegentibacter holothuriorum ; Salegentibacter salegens ; Sea Cucumbers - microbiology ; Seawater - microbiology ; Sequence Analysis, DNA ; Sequence Homology ; Staining and Labeling ; Water Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2004-07, Vol.54 (4), p.1107-1110</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c458t-ef7d15d63ff95c647ca79f3a54d085b533d9905339aadd19f94946c5b879fe003</citedby><cites>FETCH-LOGICAL-c458t-ef7d15d63ff95c647ca79f3a54d085b533d9905339aadd19f94946c5b879fe003</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15280277$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nedashkovskaya, Olga I</creatorcontrib><creatorcontrib>Suzuki, Makoto</creatorcontrib><creatorcontrib>Vancanneyt, Marc</creatorcontrib><creatorcontrib>Cleenwerck, Ilse</creatorcontrib><creatorcontrib>Zhukova, Natalia V</creatorcontrib><creatorcontrib>Vysotskii, Mikhail V</creatorcontrib><creatorcontrib>Mikhailov, Valery V</creatorcontrib><creatorcontrib>Swings, Jean</creatorcontrib><title>Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Prospekt 100 Let Vladivostoku 159, 690022 Vladivostok, Russia
2 Tokyo Research Laboratories, Kyowa Hakko Kogyo Co. Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan
3 BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium
4 Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences, Pal'chevskogo Street 17, 690032 Vladivostok, Russia
Correspondence Olga I. Nedashkovskaya olganedashkovska{at}piboc.dvo.ru
Strain KMM 3524 T was isolated from the holothurian Apostichopus japonicus living in the Sea of Japan. The bacterial strain was pigmented, non-motile, Gram-negative, strictly aerobic and oxidase-, catalase- and -galactosidase-positive. From the results of 16S rDNA sequence analysis, strain KMM 3524 T was found to be related closely to Salegentibacter salegens (98·1 %). DNADNA homology between strains KMM 3524 T and S. salegens DSM 5424 T was 38 %; this showed clearly that the holothurian isolate KMM 3524 T belongs to a novel species of the genus Salegentibacter for which the name Salegentibacter holothuriorum sp. nov. is proposed, with KMM 3524 T (=NBRC 100249 T =LMG 21968 T ) as the type strain.
Published online ahead of print on 9 January 2004 as DOI 10.1099/ijs.0.02987-0.
The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of Salegentibacter holothuriorum KMM 3524 T is AB116148 .</description><subject>Aerobiosis</subject><subject>Animals</subject><subject>Apostichopus japonicus</subject><subject>beta-Galactosidase - metabolism</subject><subject>Catalase - metabolism</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - isolation & purification</subject><subject>DNA, Ribosomal - chemistry</subject><subject>Flavobacteriaceae - classification</subject><subject>Flavobacteriaceae - cytology</subject><subject>Flavobacteriaceae - isolation & purification</subject><subject>Flavobacteriaceae - physiology</subject><subject>Genes, rRNA</subject><subject>Gentian Violet</subject><subject>Marine</subject><subject>Molecular Sequence Data</subject><subject>Movement</subject><subject>Oxidoreductases - metabolism</subject><subject>Pacific Ocean</subject><subject>Phenazines</subject><subject>Phylogeny</subject><subject>Pigments, Biological - biosynthesis</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Salegentibacter holothuriorum</subject><subject>Salegentibacter salegens</subject><subject>Sea Cucumbers - microbiology</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology</subject><subject>Staining and Labeling</subject><subject>Water Microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkEtLxTAQRoMovpduJStxYevkNo9mKeILBBfqOqRJanNpm5q0iv_eXu9Fl66-YTjzMRyETgjkBKS89MuUQw4LWYoMttA-oZxnDAq6_Tsv-B46SGkJMC8AdtEeYYsSFkLsI_OsW_fm-tFX2owu4ia0YWym6EOcOpyGHPfhI7_APoVWj87iOoYOj43DzvqqdX8HusdXQ0ijN00YpoSXegi9N1M6Qju1bpM73uQher29ebm-zx6f7h6urx4zQ1k5Zq4WljDLi7qWzHAqjBayLjSjFkpWsaKwUsIcUmtriawllZQbVpUz5gCKQ3S27h1ieJ9cGlXnk3Ftq3sXpqQ4FxzKkv8LEkEZL6mYwWwNmhhSiq5WQ_Sdjl-KgFrpV7N-BepHv1p9cLopnqrO2T9643sGztdA49-aTx-dmt13fq6vfFiVMaqoIgRE8Q0Z55Bn</recordid><startdate>20040701</startdate><enddate>20040701</enddate><creator>Nedashkovskaya, Olga I</creator><creator>Suzuki, Makoto</creator><creator>Vancanneyt, Marc</creator><creator>Cleenwerck, Ilse</creator><creator>Zhukova, Natalia V</creator><creator>Vysotskii, Mikhail V</creator><creator>Mikhailov, Valery V</creator><creator>Swings, Jean</creator><general>Soc General Microbiol</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20040701</creationdate><title>Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus</title><author>Nedashkovskaya, Olga I ; 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2 Tokyo Research Laboratories, Kyowa Hakko Kogyo Co. Ltd, 3-6-6 Asahi-machi, Machida-shi, Tokyo 194-8533, Japan
3 BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium
4 Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences, Pal'chevskogo Street 17, 690032 Vladivostok, Russia
Correspondence Olga I. Nedashkovskaya olganedashkovska{at}piboc.dvo.ru
Strain KMM 3524 T was isolated from the holothurian Apostichopus japonicus living in the Sea of Japan. The bacterial strain was pigmented, non-motile, Gram-negative, strictly aerobic and oxidase-, catalase- and -galactosidase-positive. From the results of 16S rDNA sequence analysis, strain KMM 3524 T was found to be related closely to Salegentibacter salegens (98·1 %). DNADNA homology between strains KMM 3524 T and S. salegens DSM 5424 T was 38 %; this showed clearly that the holothurian isolate KMM 3524 T belongs to a novel species of the genus Salegentibacter for which the name Salegentibacter holothuriorum sp. nov. is proposed, with KMM 3524 T (=NBRC 100249 T =LMG 21968 T ) as the type strain.
Published online ahead of print on 9 January 2004 as DOI 10.1099/ijs.0.02987-0.
The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of Salegentibacter holothuriorum KMM 3524 T is AB116148 .</abstract><cop>England</cop><pub>Soc General Microbiol</pub><pmid>15280277</pmid><doi>10.1099/ijs.0.02987-0</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Aerobiosis Animals Apostichopus japonicus beta-Galactosidase - metabolism Catalase - metabolism DNA, Bacterial - chemistry DNA, Bacterial - isolation & purification DNA, Ribosomal - chemistry Flavobacteriaceae - classification Flavobacteriaceae - cytology Flavobacteriaceae - isolation & purification Flavobacteriaceae - physiology Genes, rRNA Gentian Violet Marine Molecular Sequence Data Movement Oxidoreductases - metabolism Pacific Ocean Phenazines Phylogeny Pigments, Biological - biosynthesis RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Salegentibacter holothuriorum Salegentibacter salegens Sea Cucumbers - microbiology Seawater - microbiology Sequence Analysis, DNA Sequence Homology Staining and Labeling Water Microbiology |
| title | Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus |
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