Phylogenetic analysis, genetic diversity, and epidemiology of pigeon paramyxovirus type 1 in China
Pigeon paramyxovirus type 1 (PPMV-1) poses significant economic challenges to the pigeon industry in China. However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang pro...
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description | Pigeon paramyxovirus type 1 (PPMV-1) poses significant economic challenges to the pigeon industry in China. However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang provinces in 2022. All six isolates were found to belong to subgenotype VI.2.1.1.2.2. Five of them were identified as mesogenic and one as lentogenic. Multiple mutations were observed in the F and HN proteins of these isolates. Comprehensive analysis of global PPMV-1 strains highlighted the dominance of genotype VI, showing that VI.2.1.1.2.2 has been the dominant subgenotype since 2011. We also identified 36 host-specific amino acid substitutions that are unique to PPMV-1 in comparison to chicken-origin NDVs. The data reported here contribute to our understanding of the epidemiology, genetic diversity, and prevalence of PPMV-1 and serve as a valuable reference for the prevention and control of PPMV-1. |
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However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang provinces in 2022. All six isolates were found to belong to subgenotype VI.2.1.1.2.2. Five of them were identified as mesogenic and one as lentogenic. Multiple mutations were observed in the F and HN proteins of these isolates. Comprehensive analysis of global PPMV-1 strains highlighted the dominance of genotype VI, showing that VI.2.1.1.2.2 has been the dominant subgenotype since 2011. We also identified 36 host-specific amino acid substitutions that are unique to PPMV-1 in comparison to chicken-origin NDVs. 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However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang provinces in 2022. All six isolates were found to belong to subgenotype VI.2.1.1.2.2. Five of them were identified as mesogenic and one as lentogenic. Multiple mutations were observed in the F and HN proteins of these isolates. Comprehensive analysis of global PPMV-1 strains highlighted the dominance of genotype VI, showing that VI.2.1.1.2.2 has been the dominant subgenotype since 2011. We also identified 36 host-specific amino acid substitutions that are unique to PPMV-1 in comparison to chicken-origin NDVs. The data reported here contribute to our understanding of the epidemiology, genetic diversity, and prevalence of PPMV-1 and serve as a valuable reference for the prevention and control of PPMV-1.</description><subject>Amino acids</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>China</subject><subject>China - epidemiology</subject><subject>Columbidae - virology</subject><subject>Epidemiology</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>HN Protein - genetics</subject><subject>Host specificity</subject><subject>industry</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Mutation</subject><subject>Newcastle Disease - epidemiology</subject><subject>Newcastle Disease - virology</subject><subject>Newcastle disease virus - classification</subject><subject>Newcastle disease virus - genetics</subject><subject>Newcastle disease virus - isolation & purification</subject><subject>Original Article</subject><subject>Phylogeny</subject><subject>pigeons</subject><subject>Strains (organisms)</subject><subject>subgenotype</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU9r3DAQxUVI6G62_QI5BEEuOaxT_bMtH8OSpoVAemjPQrZHuwq25Uj2sv72VerdFnIovczAzO89iXkIXVFyRwnJP4dYSJoQJhKSUSGSwxlaUsFZIvNCnqMl4UQkMiNygS5DeCEkDnj6AS14wbNU5PkSld93U-O20MFgK6w73UzBhjU-TWq7Bx_sMK3jssbQ2xpa66Jkws7g3m7BdbjXXrfTwe2tHwMeph4wxbbDm53t9Ed0YXQT4NOxr9DPLw8_Nl-Tp-fHb5v7p6RishiSKpWkkvFjrIBKMkONYDKntaBgSglQ07wmkILOqTSFLJkwIESZGpPTqGF8hW5n39671xHCoFobKmga3YEbg-I05VJI_l8oZfFuaUYievMOfXGjj3eaqSLjXMpIsZmqvAvBg1G9t632k6JEvYWl5rBUDEv9Dksdouj6aD2WLdR_JKd0IsBnIMRVtwX_9-1_2P4CTfqfuQ</recordid><startdate>20241001</startdate><enddate>20241001</enddate><creator>Huang, Chuqi</creator><creator>Tu, Shaoyu</creator><creator>Sheng, Wei</creator><creator>Wang, Zhihao</creator><creator>Lin, Zhipeng</creator><creator>Qian, Jing</creator><creator>Zou, Jiahui</creator><creator>Zhou, Hongbo</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0002-3954-3972</orcidid></search><sort><creationdate>20241001</creationdate><title>Phylogenetic analysis, genetic diversity, and epidemiology of pigeon paramyxovirus type 1 in China</title><author>Huang, Chuqi ; 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However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang provinces in 2022. All six isolates were found to belong to subgenotype VI.2.1.1.2.2. Five of them were identified as mesogenic and one as lentogenic. Multiple mutations were observed in the F and HN proteins of these isolates. Comprehensive analysis of global PPMV-1 strains highlighted the dominance of genotype VI, showing that VI.2.1.1.2.2 has been the dominant subgenotype since 2011. We also identified 36 host-specific amino acid substitutions that are unique to PPMV-1 in comparison to chicken-origin NDVs. 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subjects | Amino acids Animals Biomedical and Life Sciences Biomedicine China China - epidemiology Columbidae - virology Epidemiology Genetic analysis Genetic diversity Genetic Variation Genotype Genotypes HN Protein - genetics Host specificity industry Infectious Diseases Medical Microbiology Mutation Newcastle Disease - epidemiology Newcastle Disease - virology Newcastle disease virus - classification Newcastle disease virus - genetics Newcastle disease virus - isolation & purification Original Article Phylogeny pigeons Strains (organisms) subgenotype Virology |
title | Phylogenetic analysis, genetic diversity, and epidemiology of pigeon paramyxovirus type 1 in China |
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