High diversity of 5S ribosomal DNA and evidence of recombination with the satellite DNA PcP190 in frogs

•Evolution of anuran 5S rDNA suggests enrollment of birth-and-death processes.•Evidence of recombination between 5S rDNA and PcP190 satellite DNA.•Functional 5S rRNA type I confirmed by transcription analysis in Leiuperinae.•Chromosome homology inferred by mapping 5S rDNA in Leiuperinae species. Dis...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Gene 2023-01, Vol.851, p.147015-147015, Article 147015
Hauptverfasser: Targueta, Cintia P., Gatto, Kaleb P., Vittorazzi, Stenio E., Recco-Pimentel, Shirlei M., Lourenço, Luciana B.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:•Evolution of anuran 5S rDNA suggests enrollment of birth-and-death processes.•Evidence of recombination between 5S rDNA and PcP190 satellite DNA.•Functional 5S rRNA type I confirmed by transcription analysis in Leiuperinae.•Chromosome homology inferred by mapping 5S rDNA in Leiuperinae species. Distinct types of 5S rDNA repeats, differing by size and composition of its non-transcribed spacer (NTS), have been found in diverse taxa. Both concerted evolution and birth-and-death evolution have proven to play important roles in the evolution of the 5S rDNA family. In anurans, however, this subject has been underexplored as only a few anuran species had their 5S rDNA characterized and evolutionary analyzed to date. In the present study, we characterized the 5S rDNA sequences from species of two anuran families using classical molecular biology techniques and bioinformatic approaches. Based on the NTS, more than one type of 5S rDNA was identified in each analyzed species, which suggests that birth-and-death processes take part in the evolution of these sequences along the Anura tree of life. In addition, closely related species shared the same types of sequences, in accordance with the model of concerted evolution. We also found evidence of recombination between 5S rDNA and PcP190 satellite DNA, a repetitive sequence that is derived from the 5S rDNA. The interplay between 5S rDNA and PcP190 satellite DNA might favor the maintenance of the latter in the genome and respond to its presence in several species of frogs. The analysis of 5S rRNA transcripts confirmed the type I 5S rDNA of leiuperine as a functional 5S rRNA gene. Finally, the chromosome mapping of 5S rDNA sequences allowed some inferences of chromosome homology in Leiuperinae. In conclusion, our study provides additional information about the organization, differentiation and functionality of 5S rDNA in anuran species, revealing the potential participation of satellite DNA in the evolution of this family of rDNA.
ISSN:0378-1119
1879-0038
DOI:10.1016/j.gene.2022.147015