A IISNPs panel for the giant panda (Ailuropoda melanoleuca)

The giant panda ( Ailuropoda melanoleuca) , as an endemic species of China, is also a flagship species of wildlife Conservation. However, the accuracy of individual identification of giant pandas is typically problematic due to the high error rate of microsatellite typing methods. In this study, a p...

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Veröffentlicht in:	Conservation genetics resources 2024-06, Vol.16 (2), p.179-182
Hauptverfasser:	Shen, Fujun, Ning, Kaile, Xu, Wei, Li, Yan, Liu, Jiawen, Liu, Hong, Wang, Juan, Zhang, Liang, Luo, Li, Wu, Kongju
Format:	Artikel
Sprache:	eng
Schlagworte:	Accuracy Ailuropoda melanoleuca Animal Genetics and Genomics Biodiversity Biomedical and Life Sciences Conservation Biology/Ecology Ecology Endemic species Evolutionary Biology flagship species genotyping Heterozygosity Identification indigenous species Life Sciences Methods and Resources microsatellite repeats Pandas Plant Genetics and Genomics Wildlife conservation wildlife management
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Zusammenfassung:	The giant panda ( Ailuropoda melanoleuca) , as an endemic species of China, is also a flagship species of wildlife Conservation. However, the accuracy of individual identification of giant pandas is typically problematic due to the high error rate of microsatellite typing methods. In this study, a panel of 61 SNP makers was developed for individual identification. Of these, 55 polymorphic SNP markers were successfully genotyped. The observed heterozygosity ( Ho ), expected heterozygosity ( He ) and polymorphic information content ( PIC ) ranged from 0.056 to 0.611 (mean 0.352), 0.131–0.509 (mean 0.389) and 0.099–0.389(mean 0.305), respectively. No SNPs significantly deviated from Hardy–Weinberg equilibrium ( P
ISSN:	1877-7260 1877-7252 1877-7260
DOI:	10.1007/s12686-024-01347-5