Revealing the Solution Conformation and Hydration Structure of Type I Tropocollagen Using X‑ray Scattering and Molecular Dynamics Simulation
Hydration plays a crucial role in regulating the dispersion behavior of biomolecules in water, particularly in how pH-sensitive hydration water network forms around proteins. This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scatte...
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Veröffentlicht in: | Biomacromolecules 2025-01, Vol.26 (1), p.449-458 |
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creator | Shiu, Ying-Jen Mansel, Bradley W. Liao, Kuei-Fen Hsu, Ting-Wei Chang, Je-Wei Shih, Orion Yeh, Yi-Qi Allwang, Johannes Jeng, U-Ser |
description | Hydration plays a crucial role in regulating the dispersion behavior of biomolecules in water, particularly in how pH-sensitive hydration water network forms around proteins. This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scattering (SWAXS) and molecular dynamics (MD) simulations. The results reveal that tropocollagen exhibits a significant softening conformation in solution, transitioning from its rod-like structure in tissues to a worm-like conformation, characterized by a reduced radius of gyration of 50 nm and a persistent length of 34 nm. The SWAXS-supported MD calculations further establish a hydration water network characterized by a 2.8 Å free-water exclusion zone where water molecules are largely hydrogen-bonded to the densely distributed polar groups on the tropocollagen surfaces. These first-layer water molecules are bridged by outer water molecules extending up to 4 Å from the protein surfaces, forming a major hydration shell that encapsulates the protein. |
doi_str_mv | 10.1021/acs.biomac.4c01261 |
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This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scattering (SWAXS) and molecular dynamics (MD) simulations. The results reveal that tropocollagen exhibits a significant softening conformation in solution, transitioning from its rod-like structure in tissues to a worm-like conformation, characterized by a reduced radius of gyration of 50 nm and a persistent length of 34 nm. The SWAXS-supported MD calculations further establish a hydration water network characterized by a 2.8 Å free-water exclusion zone where water molecules are largely hydrogen-bonded to the densely distributed polar groups on the tropocollagen surfaces. These first-layer water molecules are bridged by outer water molecules extending up to 4 Å from the protein surfaces, forming a major hydration shell that encapsulates the protein.</description><identifier>ISSN: 1525-7797</identifier><identifier>ISSN: 1526-4602</identifier><identifier>EISSN: 1526-4602</identifier><identifier>DOI: 10.1021/acs.biomac.4c01261</identifier><identifier>PMID: 39746152</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Hydrogen Bonding ; Molecular Dynamics Simulation ; Protein Conformation ; Scattering, Small Angle ; Tropocollagen - chemistry ; Water - chemistry ; X-Ray Diffraction</subject><ispartof>Biomacromolecules, 2025-01, Vol.26 (1), p.449-458</ispartof><rights>2025 The Authors. 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This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scattering (SWAXS) and molecular dynamics (MD) simulations. The results reveal that tropocollagen exhibits a significant softening conformation in solution, transitioning from its rod-like structure in tissues to a worm-like conformation, characterized by a reduced radius of gyration of 50 nm and a persistent length of 34 nm. The SWAXS-supported MD calculations further establish a hydration water network characterized by a 2.8 Å free-water exclusion zone where water molecules are largely hydrogen-bonded to the densely distributed polar groups on the tropocollagen surfaces. 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subjects | Hydrogen Bonding Molecular Dynamics Simulation Protein Conformation Scattering, Small Angle Tropocollagen - chemistry Water - chemistry X-Ray Diffraction |
title | Revealing the Solution Conformation and Hydration Structure of Type I Tropocollagen Using X‑ray Scattering and Molecular Dynamics Simulation |
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