A TBK1-independent primordial function of STING in lysosomal biogenesis

Stimulator of interferon genes (STING) is activated in many pathophysiological conditions, leading to TBK1-dependent interferon production in higher organisms. However, primordial functions of STING independent of TBK1 are poorly understood. Here, through proteomics and bioinformatics approaches, we identify lysosomal biogenesis as an unexpected function of STING. Transcription factor EB (TFEB), an evolutionarily conserved regulator of lysosomal biogenesis and host defense, is activated by STING from multiple species, including humans, mice, and frogs. STING-mediated TFEB activation is independent of TBK1, but it requires STING trafficking and its conserved proton channel. GABARAP lipidation, stimulated by the channel of STING, is key for STING-dependent TFEB activation. STING stimulates global upregulation of TFEB-target genes, mediating lysosomal biogenesis and autophagy. TFEB supports cell survival during chronic sterile STING activation, a common condition in aging and age-related diseases. These results reveal a primordial function of STING in the biogenesis of lysosomes, essential organelles in immunity and cellular stress resistance. [Display omitted] •TFEB and TFE3 are conserved effectors of STING, predating type I interferon signaling•Noncanonical GABARAP lipidation, triggered by the channel of STING, activates TFEB/TFE3•STING stimulates cytoprotective upregulation of lysosomal biogenesis and autophagy•The cGAS-STING-TFEB axis is a primordial form of the antiviral DNA-sensing pathway Lv et al. discover TFEB/TFE3 as evolutionarily ancient effectors of the cGAS-STING DNA-sensing innate immune pathway. TFEB/TFE3 activation via the channel of STING integrates cytosolic DNA sensing, a general cellular stress-sensing mechanism, with lysosomal biogenesis and autophagy upregulation, conserved and general strategies for host defense and stress clearance.