Utilizing ESI‐MS/MS and ion mobility spectrometry for structural characterization and isomer differentiation of 1, 2‐unsaturated (1‐4) linked disaccharide derivatives and their 2‐C‐functionalized analogues

Rationale The 1, 2‐unsaturated derivatives of (1‐4) linked disaccharides serve as versatile building blocks for synthesizing biologically active compounds. Distinguishing between four pairs of stereoisomers in mixtures presents a challenging task. In this study, disaccharide derivatives are analyzed as alkali metal adducts using electrospray ionization tandem mass spectrometry (ESI‐MS/MS), both as individual compounds and in mixtures by ion mobility mass spectrometry (IMS). Methods Electrospray ionization (ESI) in combination with tandem mass spectrometry (MS/MS) in positive mode was employed to differentiate lithium adduct ions of hexa‐acetyl/hexa‐benzyl‐D‐lactals, and hexa‐acetyl/hexa‐benzyl‐D‐maltals, along with their corresponding 2‐C‐branched malonates. The high resolving power of trapped ion mobility spectrometry (TIMS) with the imeX™ functionality rapidly identified different metal adducts (Li, Na, Cs) as individual isomers and separated mixtures of stereoisomers. The measured collisional cross section (CCS) values were analyzed in relation to predicted CCS values. Results MS/MS spectra of the [M + Li]+ ions of glycal disaccharide analogues exhibited typical cross‐ring and glycosidic bond cleavages. Collision‐induced dissociation (CID) spectra provided insights into their fragmentation behavior, allowing differentiation of (1‐4) linked disaccharides. TIMS technology delivered adjustable ion mobility resolution for suitable separation of the four sets of stereo isomeric compounds. However, accurately predicting CCS values to differentiate between respective isomeric pairs using the SigmaCCS program for sodium adducts is only partially achievable. Conclusions ESI CID spectra of [M + Li]+ adduct ions for individual glycal disaccharide analogues facilitate the discrimination between alpha and beta (1‐4) linked unsaturated disaccharides and their 2‐C‐branched analogues. Through optimized experimental conditions, complete baseline ion mobility separation of stereoisomer pairs of the Cs adducts is achieved.