Evaluating Fourier-transform infrared spectroscopy with IR Biotyper as a faster and simpler method for investigating the sources of an outbreak of legionellosis
Fourier-transform infrared (FTIR) spectroscopy using the IR Biotyper and core genome single nucleotide polymorphism (cgSNP) analysis were performed on 12 Legionella isolates associated with an outbreak at a spa house in Kanagawa Prefecture, Japan, and 3 non-outbreak isolates. The discriminative powe...
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| Veröffentlicht in: | European journal of clinical microbiology & infectious diseases 2024-05, Vol.43 (5), p.991-997 |
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| container_title | European journal of clinical microbiology & infectious diseases |
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| creator | Nakajima, Naoki Jinnai, Michio Izumiyama, Shinji Kuroki, Toshiro |
| description | Fourier-transform infrared (FTIR) spectroscopy using the IR Biotyper and core genome single nucleotide polymorphism (cgSNP) analysis were performed on 12
Legionella
isolates associated with an outbreak at a spa house in Kanagawa Prefecture, Japan, and 3 non-outbreak isolates. The discriminative power of FTIR spectroscopy for 48-h incubation conditions of
L
.
pneumophila
in this outbreak was lower than cgSNP-based typing but higher than serogroup typing. FTIR spectroscopy could screen outbreak isolates from a group of genetically related isolates and may be useful as an initial typing method in
Legionella
outbreak investigations. |
| doi_str_mv | 10.1007/s10096-024-04781-3 |
| format | Article |
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Legionella
isolates associated with an outbreak at a spa house in Kanagawa Prefecture, Japan, and 3 non-outbreak isolates. The discriminative power of FTIR spectroscopy for 48-h incubation conditions of
L
.
pneumophila
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Legionella
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Legionella
isolates associated with an outbreak at a spa house in Kanagawa Prefecture, Japan, and 3 non-outbreak isolates. The discriminative power of FTIR spectroscopy for 48-h incubation conditions of
L
.
pneumophila
in this outbreak was lower than cgSNP-based typing but higher than serogroup typing. FTIR spectroscopy could screen outbreak isolates from a group of genetically related isolates and may be useful as an initial typing method in
Legionella
outbreak investigations.</description><subject>Bacteria</subject><subject>Bacterial Typing Techniques - methods</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>Disease Outbreaks</subject><subject>Epidemics</subject><subject>Epidemiology</subject><subject>Fourier transforms</subject><subject>Genomes</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Infrared spectroscopy</subject><subject>Internal Medicine</subject><subject>Japan - epidemiology</subject><subject>Laboratories</subject><subject>Legionella</subject><subject>Legionella - classification</subject><subject>Legionella - genetics</subject><subject>Legionella - isolation & purification</subject><subject>Legionella pneumophila - classification</subject><subject>Legionella pneumophila - genetics</subject><subject>Legionella pneumophila - isolation & purification</subject><subject>Legionellosis - diagnosis</subject><subject>Legionellosis - epidemiology</subject><subject>Legionellosis - microbiology</subject><subject>Medical Microbiology</subject><subject>Methods</subject><subject>Nucleotides</subject><subject>Outbreaks</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Public health</subject><subject>Single-nucleotide polymorphism</subject><subject>Spectroscopy, Fourier Transform Infrared - methods</subject><subject>Spectrum analysis</subject><subject>Typing</subject><issn>0934-9723</issn><issn>1435-4373</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9Uc1u1DAQthAV3S68AAdkiQuXUMc_cXKEqqWVKiEhOFuOM9l1SeJgO0X7Nn1UZkmhEgcu9oz8_YznI-R1yd6XjOnzhGdTFYzLgkldl4V4RjalFKqQQovnZMMaIYtGc3FKzlK6Y0iqtX5BTkUtdMOU2JCHy3s7LDb7aUevwhI9xCJHO6U-xJH6qY82QkfTDC7HkFyYD_Snz3t684V-9CEfZojUJmppb1M-1hOi_TgPWI-Q96GjKIVK95Cy361OeQ80oZuDREOPHBqW3Eaw34_tADsfJhiGkHx6SU56OyR49Xhvybery68X18Xt5083Fx9uCyd4lYumVsxKy3rZtaq3slXCtlyCE3XlQHeVrVoFvHQdl31TN20nXC2hbCWXymoltuTdqjvH8GPBWc3ok8Mh7ARhSYY3vFEopjRC3_4DvcO_TDidEUxpVVUKN78lfEU53FuK0Js5-tHGgymZOeZn1vwM5md-52cEkt48Si_tCN1fyp_AECBWQMKnaQfxyfs_sr8AtVmppQ</recordid><startdate>20240501</startdate><enddate>20240501</enddate><creator>Nakajima, Naoki</creator><creator>Jinnai, Michio</creator><creator>Izumiyama, Shinji</creator><creator>Kuroki, Toshiro</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7U9</scope><scope>C1K</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>7X8</scope><orcidid>https://orcid.org/0009-0004-2214-0431</orcidid></search><sort><creationdate>20240501</creationdate><title>Evaluating Fourier-transform infrared spectroscopy with IR Biotyper as a faster and simpler method for investigating the sources of an outbreak of legionellosis</title><author>Nakajima, Naoki ; 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Legionella
isolates associated with an outbreak at a spa house in Kanagawa Prefecture, Japan, and 3 non-outbreak isolates. The discriminative power of FTIR spectroscopy for 48-h incubation conditions of
L
.
pneumophila
in this outbreak was lower than cgSNP-based typing but higher than serogroup typing. FTIR spectroscopy could screen outbreak isolates from a group of genetically related isolates and may be useful as an initial typing method in
Legionella
outbreak investigations.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>38379053</pmid><doi>10.1007/s10096-024-04781-3</doi><tpages>7</tpages><orcidid>https://orcid.org/0009-0004-2214-0431</orcidid></addata></record> |
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| subjects | Bacteria Bacterial Typing Techniques - methods Biomedical and Life Sciences Biomedicine Brief Report Disease Outbreaks Epidemics Epidemiology Fourier transforms Genomes Humans Infectious diseases Infrared spectroscopy Internal Medicine Japan - epidemiology Laboratories Legionella Legionella - classification Legionella - genetics Legionella - isolation & purification Legionella pneumophila - classification Legionella pneumophila - genetics Legionella pneumophila - isolation & purification Legionellosis - diagnosis Legionellosis - epidemiology Legionellosis - microbiology Medical Microbiology Methods Nucleotides Outbreaks Polymorphism Polymorphism, Single Nucleotide Public health Single-nucleotide polymorphism Spectroscopy, Fourier Transform Infrared - methods Spectrum analysis Typing |
| title | Evaluating Fourier-transform infrared spectroscopy with IR Biotyper as a faster and simpler method for investigating the sources of an outbreak of legionellosis |
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