Next Generation Sequencing of Red Blood Cell Antigens in Transfusion Medicine: Systematic Review and Meta-Analysis
•NGS presents high agreement in relation to other molecular methods for red blood cell polymorphism analysis.•NGS can be used for the prediction of blood groups.•NGS allows the simultaneous evaluation of a great number of samples and gene regions.•Costs, quality parameters and bioinformatics analysi...
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Veröffentlicht in: | Transfusion medicine reviews 2024-01, Vol.38 (1), p.150776-150776, Article 150776 |
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Zusammenfassung: | •NGS presents high agreement in relation to other molecular methods for red blood cell polymorphism analysis.•NGS can be used for the prediction of blood groups.•NGS allows the simultaneous evaluation of a great number of samples and gene regions.•Costs, quality parameters and bioinformatics analysis are critical points for the implementation of NGS in the routine of blood banks.
Molecular analysis of blood groups is important in transfusion medicine, allowing the prediction of red blood cell (RBC) antigens. Many blood banks use single nucleotide variant (SNV) based methods for blood group analysis. While this is a well-established approach, it is limited to the polymorphisms included in genotyping panels. Thus, variants that alter antigenic expression may be ignored, resulting in incorrect prediction of phenotypes. The popularization of next-generation sequencing (NGS) has led to its application in transfusion medicine, including for RBC antigens determination. The present review/meta-analysis aimed to evaluate the applicability of the NGS for the prediction of RBC antigens. A systematic review was conducted following a comprehensive literature search in accordance with the Preferred Reporting Items for Systematic Review and Meta-Analysis guidelines. Studies were selected based on predefined criteria and evaluated using Strengthening the Reporting of Observational studies in Epidemiology guidelines. The characteristics and results of the studies were extracted and meta-analysis was performed to verify the agreement between results from standard molecular methods and NGS. Kell (rs8176058), Duffy (rs2814778, rs12078) or Kidd (rs1085396) alleles were selected as a model for comparisons. Additionally, results are presented for other blood group systems. Of the 864 eligible studies identified, 10 met the inclusion criteria and were selected for meta-analysis. The pooled concordance proportion for NGS compared to other methods ranged from 0.982 to 0.994. The sequencing depth coverage was identified as crucial parameters for the reliability of the results. Some studies reported difficulty in analyzing more complex systems, such as Rh and MNS, requiring the adoption of specific strategies. NGS is a technology capable of predicting blood group phenotypes and has many strengths such as the possibility of simultaneously analyzing hundred individuals and gene regions, and the ability to provide comprehensive genetic analysis, which is useful in the description of new |
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ISSN: | 0887-7963 1532-9496 |
DOI: | 10.1016/j.tmrv.2023.150776 |