Comparative transcriptome analysis reveals the key genes and pathways involved in drought stress response of two wheat (Triticum aestivum L) varieties

Drought stress results in significant yield losses in wheat production. Although studies have reported a number of wheat drought tolerance genes, a deeper understanding of the tolerance mechanisms is required for improving wheat tolerance against drought stress. In this study, we found that “Deguo 2” exhibited higher tolerance to drought than “Truman”. Transcriptomics analysis enabled identification of 6084 and 7146 differentially expressed genes (DEGs), mainly mapping flavonoid biosynthesis, plant hormone, phenolamides and antioxidant pathways and revealed altered expression levels of about 700 genes. Exogenous melatonin application enhanced wheat tolerance against drought stress. Co-expression analysis showed that bHLH and bZIP transcription factors may be involved in the regulation of various pathway genes. Take together, these results provide new insights for us on exploring the crosstalk between phytohormones and secondary metabolites, and will deepen the understanding of the complex tolerance mechanisms against drought stress in wheat. •Transcriptomics analysis between "DEGUO 2" and "Truman" enabled identification of mass differential expression genes including flavonoid biosynthesis, ABA signaling, phenolamides and antioxidant pathways.•Exogenous melatonin application enhanced wheat tolerance against drought stress.•Co-expression analysis showed that bHLH and bZIP transcription factors may be involved in the regulation of various pathway genes.