Tandem duplication and sub‐functionalization of clerodane diterpene synthase originate the blooming of clerodane diterpenoids in Scutellaria barbata

Scutellaria barbata is a traditional Chinese herb medicine and a major source of bioactive clerodane diterpenoids. However, barely clerodanes have been isolated from the closely related S. baicalensis . Here we assembled a chromosome‐level genome of S. barbata and identified three class II clerodane diterpene synthases (SbarKPS1, SbarKPS2 and SbaiKPS1) from these two organisms. Using in vitro and in vivo assays, SbarKPS1 was characterized as a monofunctional (−)‐kolavenyl diphosphate synthases ((−) ‐ KPS), while SbarKPS2 and SbaiKPS1 produced major neo ‐cleroda‐4(18),13 E ‐dienyl diphosphate with small amount of (−) ‐ KPP. SbarKPS1 and SbarKPS2 shared a high protein sequence identity and formed a tandem gene pair, indicating tandem duplication and sub‐functionalization probably led to the evolution of monofunctional (−)‐KPS in S. barbata . Additionally, SbarKPS1 and SbarKPS2 were primarily expressed in the leaves and flowers of S. barbata , which was consistent with the distribution of major clerodane diterpenoids scutebarbatine A and B. In contrast, SbaiKPS1 was barely expressed in any tissue of S. baicalensis . We further explored the downstream class I diTPS by functional characterizing of SbarKSL3 and SbarKSL4. Unfortunately, no dephosphorylated product was detected in the coupled assays with SbarKSL3/KSL4 and four class II diTPSs (SbarKPS1, SbarKPS2, SbarCPS2 and SbarCPS4) when a phosphatase inhibitor cocktail was included. Co‐expression of SbarKSL3/KSL4 with class II diTPSs in yeast cells did not increase the yield of the corresponding dephosphorylated products, either. Together, these findings elucidated the involvement of two class II diTPSs in clerodane biosynthesis in S. barbata , while the class I diTPS is likely not responsible for the subsequent dephosphorylation step. This study reveals that the class II clerodane diTPS is one of the key factors contributing to the distinct clerodane diterpenoid profiles between S. barbata and S. baicalensis ; and strongly indicates that class I diTPS is not involved in the clerodane diterpenoid biosynthesis in S. barbata .