A framework for brain tumor detection based on segmentation and features fusion using MRI images
[Display omitted] •State-of-the art brain tumor segmentation techniques require expert brain tumor detection.•Automatic brain tumor extraction improves the detection performance.•Feature fusion and classification using DL network outperforms the state-of-the-art methods. Irregular growth of cells in...
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Veröffentlicht in: | Brain research 2023-05, Vol.1806, p.148300-148300, Article 148300 |
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creator | Mohamad Mostafa, Almetwally El-Meligy, Mohammed A. Abdullah Alkhayyal, Maram Alnuaim, Abeer Sharaf, Mohamed |
description | [Display omitted]
•State-of-the art brain tumor segmentation techniques require expert brain tumor detection.•Automatic brain tumor extraction improves the detection performance.•Feature fusion and classification using DL network outperforms the state-of-the-art methods.
Irregular growth of cells in the skull is recognized as a brain tumor that can have two types such as benign and malignant. There exist various methods which are used by oncologists to assess the existence of brain tumors such as blood tests or visual assessments. Moreover, the noninvasive magnetic resonance imaging (MRI) technique without ionizing radiation has been commonly utilized for diagnosis. However, the segmentation in 3-dimensional MRI is time-consuming and the outcomes mainly depend on the operator’s experience. Therefore, a novel and robust automated brain tumor detector has been suggested based on segmentation and fusion of features. To improve the localization results, we pre-processed the images using Gaussian Filter (GF), and SynthStrip: a tool for brain skull stripping. We utilized two known benchmarks for training and testing i.e., Figshare and Harvard. The proposed methodology attained 99.8% accuracy, 99.3% recall, 99.4% precision, 99.5% F1 score, and 0.989 AUC. We performed the comparative analysis of our approach with prevailing DL, classical, and segmentation-based approaches. Additionally, we also performed the cross-validation using Harvard dataset attaining 99.3% identification accuracy. The outcomes exhibit that our approach offers significant outcomes than existing methods and outperforms them. |
doi_str_mv | 10.1016/j.brainres.2023.148300 |
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•State-of-the art brain tumor segmentation techniques require expert brain tumor detection.•Automatic brain tumor extraction improves the detection performance.•Feature fusion and classification using DL network outperforms the state-of-the-art methods.
Irregular growth of cells in the skull is recognized as a brain tumor that can have two types such as benign and malignant. There exist various methods which are used by oncologists to assess the existence of brain tumors such as blood tests or visual assessments. Moreover, the noninvasive magnetic resonance imaging (MRI) technique without ionizing radiation has been commonly utilized for diagnosis. However, the segmentation in 3-dimensional MRI is time-consuming and the outcomes mainly depend on the operator’s experience. Therefore, a novel and robust automated brain tumor detector has been suggested based on segmentation and fusion of features. To improve the localization results, we pre-processed the images using Gaussian Filter (GF), and SynthStrip: a tool for brain skull stripping. We utilized two known benchmarks for training and testing i.e., Figshare and Harvard. The proposed methodology attained 99.8% accuracy, 99.3% recall, 99.4% precision, 99.5% F1 score, and 0.989 AUC. We performed the comparative analysis of our approach with prevailing DL, classical, and segmentation-based approaches. Additionally, we also performed the cross-validation using Harvard dataset attaining 99.3% identification accuracy. The outcomes exhibit that our approach offers significant outcomes than existing methods and outperforms them.</description><identifier>ISSN: 0006-8993</identifier><identifier>EISSN: 1872-6240</identifier><identifier>DOI: 10.1016/j.brainres.2023.148300</identifier><identifier>PMID: 36842569</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Algorithms ; Brain - diagnostic imaging ; Brain - pathology ; Brain Neoplasms - diagnostic imaging ; Brain Neoplasms - pathology ; Brain tumor ; Features fusion ; Humans ; Image Processing, Computer-Assisted - methods ; Magnetic Resonance Imaging - methods ; Segmentation ; Tumor detection</subject><ispartof>Brain research, 2023-05, Vol.1806, p.148300-148300, Article 148300</ispartof><rights>2023 Elsevier B.V.</rights><rights>Copyright © 2023 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c368t-62eb76d139630699abb50754073ab407004f8b17b29a577c9a0034f2dd812c83</citedby><cites>FETCH-LOGICAL-c368t-62eb76d139630699abb50754073ab407004f8b17b29a577c9a0034f2dd812c83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.brainres.2023.148300$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,778,782,3539,27907,27908,45978</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36842569$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mohamad Mostafa, Almetwally</creatorcontrib><creatorcontrib>El-Meligy, Mohammed A.</creatorcontrib><creatorcontrib>Abdullah Alkhayyal, Maram</creatorcontrib><creatorcontrib>Alnuaim, Abeer</creatorcontrib><creatorcontrib>Sharaf, Mohamed</creatorcontrib><title>A framework for brain tumor detection based on segmentation and features fusion using MRI images</title><title>Brain research</title><addtitle>Brain Res</addtitle><description>[Display omitted]
•State-of-the art brain tumor segmentation techniques require expert brain tumor detection.•Automatic brain tumor extraction improves the detection performance.•Feature fusion and classification using DL network outperforms the state-of-the-art methods.
Irregular growth of cells in the skull is recognized as a brain tumor that can have two types such as benign and malignant. There exist various methods which are used by oncologists to assess the existence of brain tumors such as blood tests or visual assessments. Moreover, the noninvasive magnetic resonance imaging (MRI) technique without ionizing radiation has been commonly utilized for diagnosis. However, the segmentation in 3-dimensional MRI is time-consuming and the outcomes mainly depend on the operator’s experience. Therefore, a novel and robust automated brain tumor detector has been suggested based on segmentation and fusion of features. To improve the localization results, we pre-processed the images using Gaussian Filter (GF), and SynthStrip: a tool for brain skull stripping. We utilized two known benchmarks for training and testing i.e., Figshare and Harvard. The proposed methodology attained 99.8% accuracy, 99.3% recall, 99.4% precision, 99.5% F1 score, and 0.989 AUC. We performed the comparative analysis of our approach with prevailing DL, classical, and segmentation-based approaches. Additionally, we also performed the cross-validation using Harvard dataset attaining 99.3% identification accuracy. The outcomes exhibit that our approach offers significant outcomes than existing methods and outperforms them.</description><subject>Algorithms</subject><subject>Brain - diagnostic imaging</subject><subject>Brain - pathology</subject><subject>Brain Neoplasms - diagnostic imaging</subject><subject>Brain Neoplasms - pathology</subject><subject>Brain tumor</subject><subject>Features fusion</subject><subject>Humans</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Segmentation</subject><subject>Tumor detection</subject><issn>0006-8993</issn><issn>1872-6240</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1PwzAMhiMEgvHxF6YcuWw4SZePGxPiSwIhIe4hadypY21H0oL492RscOXiONZr-_VDyJjBlAGTF8upj65uI6YpBy6mrNACYI-MmFZ8InkB-2QEAHKijRFH5DilZf4KYeCQHAmpCz6TZkRe57SKrsHPLr7Rqov0ZyzthybnAXss-7prqXcJA81JwkWDbe9-qq4NtELXD9kGrYa0qeXYLujj8z2tG7fAdEoOKrdKeLZ7T8jLzfXL1d3k4en2_mr-MCmzmT47Rq9kYMJIAdIY5_0M1KwAJZzPEaCotGfKc-NmSpXG5WOKioegGS-1OCHn27Hr2L0PmHrb1KnE1cq12A3JcqWh0IoplaVyKy1jl1LEyq5j9hq_LAO7gWuX9heu3cC1W7i5cbzbMfgGw1_bL80suNwKMB_6UWO0qayxLTHUMYO0oav_2_ENbDWN7Q</recordid><startdate>20230501</startdate><enddate>20230501</enddate><creator>Mohamad Mostafa, Almetwally</creator><creator>El-Meligy, Mohammed A.</creator><creator>Abdullah Alkhayyal, Maram</creator><creator>Alnuaim, Abeer</creator><creator>Sharaf, Mohamed</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20230501</creationdate><title>A framework for brain tumor detection based on segmentation and features fusion using MRI images</title><author>Mohamad Mostafa, Almetwally ; El-Meligy, Mohammed A. ; Abdullah Alkhayyal, Maram ; Alnuaim, Abeer ; Sharaf, Mohamed</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c368t-62eb76d139630699abb50754073ab407004f8b17b29a577c9a0034f2dd812c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Algorithms</topic><topic>Brain - diagnostic imaging</topic><topic>Brain - pathology</topic><topic>Brain Neoplasms - diagnostic imaging</topic><topic>Brain Neoplasms - pathology</topic><topic>Brain tumor</topic><topic>Features fusion</topic><topic>Humans</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Segmentation</topic><topic>Tumor detection</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mohamad Mostafa, Almetwally</creatorcontrib><creatorcontrib>El-Meligy, Mohammed A.</creatorcontrib><creatorcontrib>Abdullah Alkhayyal, Maram</creatorcontrib><creatorcontrib>Alnuaim, Abeer</creatorcontrib><creatorcontrib>Sharaf, Mohamed</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Brain research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mohamad Mostafa, Almetwally</au><au>El-Meligy, Mohammed A.</au><au>Abdullah Alkhayyal, Maram</au><au>Alnuaim, Abeer</au><au>Sharaf, Mohamed</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A framework for brain tumor detection based on segmentation and features fusion using MRI images</atitle><jtitle>Brain research</jtitle><addtitle>Brain Res</addtitle><date>2023-05-01</date><risdate>2023</risdate><volume>1806</volume><spage>148300</spage><epage>148300</epage><pages>148300-148300</pages><artnum>148300</artnum><issn>0006-8993</issn><eissn>1872-6240</eissn><abstract>[Display omitted]
•State-of-the art brain tumor segmentation techniques require expert brain tumor detection.•Automatic brain tumor extraction improves the detection performance.•Feature fusion and classification using DL network outperforms the state-of-the-art methods.
Irregular growth of cells in the skull is recognized as a brain tumor that can have two types such as benign and malignant. There exist various methods which are used by oncologists to assess the existence of brain tumors such as blood tests or visual assessments. Moreover, the noninvasive magnetic resonance imaging (MRI) technique without ionizing radiation has been commonly utilized for diagnosis. However, the segmentation in 3-dimensional MRI is time-consuming and the outcomes mainly depend on the operator’s experience. Therefore, a novel and robust automated brain tumor detector has been suggested based on segmentation and fusion of features. To improve the localization results, we pre-processed the images using Gaussian Filter (GF), and SynthStrip: a tool for brain skull stripping. We utilized two known benchmarks for training and testing i.e., Figshare and Harvard. The proposed methodology attained 99.8% accuracy, 99.3% recall, 99.4% precision, 99.5% F1 score, and 0.989 AUC. We performed the comparative analysis of our approach with prevailing DL, classical, and segmentation-based approaches. Additionally, we also performed the cross-validation using Harvard dataset attaining 99.3% identification accuracy. The outcomes exhibit that our approach offers significant outcomes than existing methods and outperforms them.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>36842569</pmid><doi>10.1016/j.brainres.2023.148300</doi><tpages>1</tpages></addata></record> |
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subjects | Algorithms Brain - diagnostic imaging Brain - pathology Brain Neoplasms - diagnostic imaging Brain Neoplasms - pathology Brain tumor Features fusion Humans Image Processing, Computer-Assisted - methods Magnetic Resonance Imaging - methods Segmentation Tumor detection |
title | A framework for brain tumor detection based on segmentation and features fusion using MRI images |
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