Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil
A Gram-staining-positive, non-spore-forming, non-flagellated, ellipsoidal, strain Z1-20 T belonging to the genus Arthrobacter was isolated from a soil sample collected from the Zhongshan station, Antarctic. Phylogenetic analysis of the 16S rRNA gene sequences and phylogenetic analysis revealed that...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2022-05, Vol.115 (5), p.635-644 |
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| description | A Gram-staining-positive, non-spore-forming, non-flagellated, ellipsoidal, strain Z1-20
T
belonging to the genus
Arthrobacter
was isolated from a soil sample collected from the Zhongshan station, Antarctic. Phylogenetic analysis of the 16S rRNA gene sequences and phylogenetic analysis revealed that strain Z1-20
T
formed a unique single cluster in the genus
Arthrobacter
and shared high 16S rRNA sequence similarities of 97.1% and 96.9% with
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
, respectively. Values of Digital DNA-DNA hybridization (dDDH) between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 20.3% and 13.8%, respectively. Average nucleotide identity (ANI) score between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 72.5% and 72.1%, respectively. Genes for the synthesis of the osmoprotectant glycine betaine and higher copies of
cap
A gene encoding cold shock protein were found in genome of Z1-20
T
that may help Z1-20
T
in cold-adaptation. Strain Z1-20
T
comprised lysine as the diagnostic diamino acid. Based on the results of phylogenetic, phenotypic and chemotaxonomic features, strain Z1-20
T
represents a novel species of a novel taxon of genus
Arthrobacter
, for which the name
Arthrobacter terrae
gen. nov., sp. nov. is proposed. |
| doi_str_mv | 10.1007/s10482-022-01727-7 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2644006507</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2649845526</sourcerecordid><originalsourceid>FETCH-LOGICAL-c305t-dcd82c9f099761fff8218ad4cbe60d6ba17964be8765aa95628a560de08217a53</originalsourceid><addsrcrecordid>eNp90U1r2zAYB3AxVtY02xfYYQh26aHOHsnW2zGUvkGhl_YsZFlOVGzLk-yVfPsqTbZBDz0IIZ6f_hL8EfpOYEUAxK9EoJK0AJoXEVQU4hNaECZoobhSn9ECAMqCg6Cn6Cyl53xUXIov6LRkZSkrCgu0W8dpG0Nt7OQizisah9O4wkP4s7rABo9pZzMYt77zFmfmh6P2c49f_LTF_dxNHtswepdwaLE14xpv3OCwT6Ezk2twG0OP18NkYg6wOAXffUUnremS-3bcl-jp-urx8ra4f7i5u1zfF7YENhWNbSS1qgWlBCdt20pKpGkqWzsODa8NEYpXtZOCM2MU41QalicOMhSGlUt0fsgdY_g9uzTp3ifrus4MLsxJU15VAJyByPTnO_oc5jjk3-2VkhVjlGdFD8rGkFJ0rR6j703caQJ6X4w-FKNzMfqtGL2P_nGMnuveNf-u_G0ig_IAUh4NGxf_v_1B7CueqJlR</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2649845526</pqid></control><display><type>article</type><title>Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Jiang, Peiqiang ; Ren, Xintao ; Wang, Wenjing ; Niu, Guojiang ; Li, Jing</creator><creatorcontrib>Jiang, Peiqiang ; Ren, Xintao ; Wang, Wenjing ; Niu, Guojiang ; Li, Jing</creatorcontrib><description>A Gram-staining-positive, non-spore-forming, non-flagellated, ellipsoidal, strain Z1-20
T
belonging to the genus
Arthrobacter
was isolated from a soil sample collected from the Zhongshan station, Antarctic. Phylogenetic analysis of the 16S rRNA gene sequences and phylogenetic analysis revealed that strain Z1-20
T
formed a unique single cluster in the genus
Arthrobacter
and shared high 16S rRNA sequence similarities of 97.1% and 96.9% with
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
, respectively. Values of Digital DNA-DNA hybridization (dDDH) between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 20.3% and 13.8%, respectively. Average nucleotide identity (ANI) score between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 72.5% and 72.1%, respectively. Genes for the synthesis of the osmoprotectant glycine betaine and higher copies of
cap
A gene encoding cold shock protein were found in genome of Z1-20
T
that may help Z1-20
T
in cold-adaptation. Strain Z1-20
T
comprised lysine as the diagnostic diamino acid. Based on the results of phylogenetic, phenotypic and chemotaxonomic features, strain Z1-20
T
represents a novel species of a novel taxon of genus
Arthrobacter
, for which the name
Arthrobacter terrae
gen. nov., sp. nov. is proposed.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-022-01727-7</identifier><identifier>PMID: 35338420</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Actinobacteria - genetics ; Antarctic Regions ; Arthrobacter ; Arthrobacter - metabolism ; Bacterial Typing Techniques ; Base Composition ; Biomedical and Life Sciences ; Cold shock proteins ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; DNA, Bacterial - metabolism ; Fatty Acids - metabolism ; Gene sequencing ; Genomes ; Glycine ; Glycine betaine ; Hybridization ; Life Sciences ; Lysine ; Medical Microbiology ; Microbiology ; New species ; Nucleotides ; Original Paper ; Phylogenetics ; Phylogeny ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; RNA, Ribosomal, 16S - metabolism ; rRNA 16S ; Sequence Analysis, DNA ; Soil ; Soil Science & Conservation</subject><ispartof>Antonie van Leeuwenhoek, 2022-05, Vol.115 (5), p.635-644</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022</rights><rights>2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c305t-dcd82c9f099761fff8218ad4cbe60d6ba17964be8765aa95628a560de08217a53</citedby><cites>FETCH-LOGICAL-c305t-dcd82c9f099761fff8218ad4cbe60d6ba17964be8765aa95628a560de08217a53</cites><orcidid>0000-0002-9825-1259</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-022-01727-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-022-01727-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35338420$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jiang, Peiqiang</creatorcontrib><creatorcontrib>Ren, Xintao</creatorcontrib><creatorcontrib>Wang, Wenjing</creatorcontrib><creatorcontrib>Niu, Guojiang</creatorcontrib><creatorcontrib>Li, Jing</creatorcontrib><title>Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A Gram-staining-positive, non-spore-forming, non-flagellated, ellipsoidal, strain Z1-20
T
belonging to the genus
Arthrobacter
was isolated from a soil sample collected from the Zhongshan station, Antarctic. Phylogenetic analysis of the 16S rRNA gene sequences and phylogenetic analysis revealed that strain Z1-20
T
formed a unique single cluster in the genus
Arthrobacter
and shared high 16S rRNA sequence similarities of 97.1% and 96.9% with
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
, respectively. Values of Digital DNA-DNA hybridization (dDDH) between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 20.3% and 13.8%, respectively. Average nucleotide identity (ANI) score between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 72.5% and 72.1%, respectively. Genes for the synthesis of the osmoprotectant glycine betaine and higher copies of
cap
A gene encoding cold shock protein were found in genome of Z1-20
T
that may help Z1-20
T
in cold-adaptation. Strain Z1-20
T
comprised lysine as the diagnostic diamino acid. Based on the results of phylogenetic, phenotypic and chemotaxonomic features, strain Z1-20
T
represents a novel species of a novel taxon of genus
Arthrobacter
, for which the name
Arthrobacter terrae
gen. nov., sp. nov. is proposed.</description><subject>Actinobacteria - genetics</subject><subject>Antarctic Regions</subject><subject>Arthrobacter</subject><subject>Arthrobacter - metabolism</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Cold shock proteins</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Bacterial - metabolism</subject><subject>Fatty Acids - metabolism</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Glycine</subject><subject>Glycine betaine</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lysine</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>RNA, Ribosomal, 16S - metabolism</subject><subject>rRNA 16S</subject><subject>Sequence Analysis, DNA</subject><subject>Soil</subject><subject>Soil Science & Conservation</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp90U1r2zAYB3AxVtY02xfYYQh26aHOHsnW2zGUvkGhl_YsZFlOVGzLk-yVfPsqTbZBDz0IIZ6f_hL8EfpOYEUAxK9EoJK0AJoXEVQU4hNaECZoobhSn9ECAMqCg6Cn6Cyl53xUXIov6LRkZSkrCgu0W8dpG0Nt7OQizisah9O4wkP4s7rABo9pZzMYt77zFmfmh6P2c49f_LTF_dxNHtswepdwaLE14xpv3OCwT6Ezk2twG0OP18NkYg6wOAXffUUnremS-3bcl-jp-urx8ra4f7i5u1zfF7YENhWNbSS1qgWlBCdt20pKpGkqWzsODa8NEYpXtZOCM2MU41QalicOMhSGlUt0fsgdY_g9uzTp3ifrus4MLsxJU15VAJyByPTnO_oc5jjk3-2VkhVjlGdFD8rGkFJ0rR6j703caQJ6X4w-FKNzMfqtGL2P_nGMnuveNf-u_G0ig_IAUh4NGxf_v_1B7CueqJlR</recordid><startdate>20220501</startdate><enddate>20220501</enddate><creator>Jiang, Peiqiang</creator><creator>Ren, Xintao</creator><creator>Wang, Wenjing</creator><creator>Niu, Guojiang</creator><creator>Li, Jing</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9825-1259</orcidid></search><sort><creationdate>20220501</creationdate><title>Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil</title><author>Jiang, Peiqiang ; Ren, Xintao ; Wang, Wenjing ; Niu, Guojiang ; Li, Jing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c305t-dcd82c9f099761fff8218ad4cbe60d6ba17964be8765aa95628a560de08217a53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Actinobacteria - genetics</topic><topic>Antarctic Regions</topic><topic>Arthrobacter</topic><topic>Arthrobacter - metabolism</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Cold shock proteins</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Bacterial - metabolism</topic><topic>Fatty Acids - metabolism</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Glycine</topic><topic>Glycine betaine</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lysine</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>RNA, Ribosomal, 16S - metabolism</topic><topic>rRNA 16S</topic><topic>Sequence Analysis, DNA</topic><topic>Soil</topic><topic>Soil Science & Conservation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jiang, Peiqiang</creatorcontrib><creatorcontrib>Ren, Xintao</creatorcontrib><creatorcontrib>Wang, Wenjing</creatorcontrib><creatorcontrib>Niu, Guojiang</creatorcontrib><creatorcontrib>Li, Jing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jiang, Peiqiang</au><au>Ren, Xintao</au><au>Wang, Wenjing</au><au>Niu, Guojiang</au><au>Li, Jing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2022-05-01</date><risdate>2022</risdate><volume>115</volume><issue>5</issue><spage>635</spage><epage>644</epage><pages>635-644</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A Gram-staining-positive, non-spore-forming, non-flagellated, ellipsoidal, strain Z1-20
T
belonging to the genus
Arthrobacter
was isolated from a soil sample collected from the Zhongshan station, Antarctic. Phylogenetic analysis of the 16S rRNA gene sequences and phylogenetic analysis revealed that strain Z1-20
T
formed a unique single cluster in the genus
Arthrobacter
and shared high 16S rRNA sequence similarities of 97.1% and 96.9% with
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
, respectively. Values of Digital DNA-DNA hybridization (dDDH) between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 20.3% and 13.8%, respectively. Average nucleotide identity (ANI) score between strain Z1-20
T
against
A. glacialis
HLT2-12-2
T
and
A. psychrochitiniphilus
GP3
T
were 72.5% and 72.1%, respectively. Genes for the synthesis of the osmoprotectant glycine betaine and higher copies of
cap
A gene encoding cold shock protein were found in genome of Z1-20
T
that may help Z1-20
T
in cold-adaptation. Strain Z1-20
T
comprised lysine as the diagnostic diamino acid. Based on the results of phylogenetic, phenotypic and chemotaxonomic features, strain Z1-20
T
represents a novel species of a novel taxon of genus
Arthrobacter
, for which the name
Arthrobacter terrae
gen. nov., sp. nov. is proposed.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>35338420</pmid><doi>10.1007/s10482-022-01727-7</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-9825-1259</orcidid></addata></record> |
| fulltext | fulltext |
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| ispartof | Antonie van Leeuwenhoek, 2022-05, Vol.115 (5), p.635-644 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2644006507 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Actinobacteria - genetics Antarctic Regions Arthrobacter Arthrobacter - metabolism Bacterial Typing Techniques Base Composition Biomedical and Life Sciences Cold shock proteins Deoxyribonucleic acid DNA DNA, Bacterial - genetics DNA, Bacterial - metabolism Fatty Acids - metabolism Gene sequencing Genomes Glycine Glycine betaine Hybridization Life Sciences Lysine Medical Microbiology Microbiology New species Nucleotides Original Paper Phylogenetics Phylogeny Plant Sciences RNA, Ribosomal, 16S - genetics RNA, Ribosomal, 16S - metabolism rRNA 16S Sequence Analysis, DNA Soil Soil Science & Conservation |
| title | Arthrobacter terrae sp. nov., a psychrophilic actinobacterium with multi copies of capA gene isolated from Antarctic soil |
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