Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria
Two new marine actinobacteria, designated as J2-1 and J2-2 , were isolated from a coral, , collected from Rayong Province, Thailand. The taxonomic positions of the two strains were identified based on polyphasic taxonomy. Based on morphological characteristics and chemotaxonomy, strains J2-1 and J2-...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2022-02, Vol.72 (2) |
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| creator | Buangrab, Kusuma Sutthacheep, Makamas Yeemin, Thamasak Harunari, Enjuro Igarashi, Yasuhiro Sripreechasak, Paranee Kanchanasin, Pawina Tanasupawat, Somboon Phongsopitanun, Wongsakorn |
| description | Two new marine actinobacteria, designated as J2-1
and J2-2
, were isolated from a coral,
, collected from Rayong Province, Thailand. The taxonomic positions of the two strains were identified based on polyphasic taxonomy. Based on morphological characteristics and chemotaxonomy, strains J2-1
and J2-2
were identified as members of the genus
and
, respectively. Strains J2-1
and J2-2
showed the highest 16S rRNA gene sequence similarity to
T44
(98.62 %) and
VN05A0415
(98.08 %), respectively. Strain J2-1
had chemotaxonomic properties resembling members of the genus
. ll-Diaminopimelic acid, glucose and ribose were detected in the whole-cell hydrolysate. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositolmannoside, unidentified aminolipid and five unidentified phospholipids were detected as the polar lipids. The major cellular fatty acids were C
iso, C
anteiso, C
iso, C
, C
anteiso, C
iso and C
iso. Strain J2-2
a showed similar cell composition to members of the genus
. Both isomers of ll- and
-diaminopimelic acid were detected in the peptidoglycan. Arabinose, galactose, madurose and xylose were observed in the whole-cell hydrolysate. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, phosphatidylcholine, an unidentified phospholipid and an unidentified glycolipid. The major cellular fatty acids were C
, C
ω9
, C
10-methyl, tuberculostearic acid, C
and C
. Both strains could be distinguished from their closely related type strains according to their phenotypic characteristics. Comparative genome analysis indicated the delineation of two novel species based on digital DNA-DNA hybridization and average nucleotide identity values, which were below 70 and 95 %, respectively. The names proposed are
sp. nov. (J2-1
=TBRC 13503
=NBRC 115066
) and
sp. nov. (J2-2
=TBRC 13504
=NBRC 114885
). |
| doi_str_mv | 10.1099/ijsem.0.005249 |
| format | Article |
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and J2-2
, were isolated from a coral,
, collected from Rayong Province, Thailand. The taxonomic positions of the two strains were identified based on polyphasic taxonomy. Based on morphological characteristics and chemotaxonomy, strains J2-1
and J2-2
were identified as members of the genus
and
, respectively. Strains J2-1
and J2-2
showed the highest 16S rRNA gene sequence similarity to
T44
(98.62 %) and
VN05A0415
(98.08 %), respectively. Strain J2-1
had chemotaxonomic properties resembling members of the genus
. ll-Diaminopimelic acid, glucose and ribose were detected in the whole-cell hydrolysate. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositolmannoside, unidentified aminolipid and five unidentified phospholipids were detected as the polar lipids. The major cellular fatty acids were C
iso, C
anteiso, C
iso, C
, C
anteiso, C
iso and C
iso. Strain J2-2
a showed similar cell composition to members of the genus
. Both isomers of ll- and
-diaminopimelic acid were detected in the peptidoglycan. Arabinose, galactose, madurose and xylose were observed in the whole-cell hydrolysate. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, phosphatidylcholine, an unidentified phospholipid and an unidentified glycolipid. The major cellular fatty acids were C
, C
ω9
, C
10-methyl, tuberculostearic acid, C
and C
. Both strains could be distinguished from their closely related type strains according to their phenotypic characteristics. Comparative genome analysis indicated the delineation of two novel species based on digital DNA-DNA hybridization and average nucleotide identity values, which were below 70 and 95 %, respectively. The names proposed are
sp. nov. (J2-1
=TBRC 13503
=NBRC 115066
) and
sp. nov. (J2-2
=TBRC 13504
=NBRC 114885
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005249</identifier><identifier>PMID: 35188884</identifier><language>eng</language><publisher>England</publisher><subject>Actinobacteria - classification ; Actinobacteria - isolation & purification ; Animals ; Anthozoa - microbiology ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Nucleic Acid Hybridization ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Streptomyces - classification ; Streptomyces - isolation & purification ; Thailand</subject><ispartof>International journal of systematic and evolutionary microbiology, 2022-02, Vol.72 (2)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c295t-5abbed2bdd2fcd01c0da495835ab901900faf2516150c65ebbf4db7bb350bbc53</citedby><cites>FETCH-LOGICAL-c295t-5abbed2bdd2fcd01c0da495835ab901900faf2516150c65ebbf4db7bb350bbc53</cites><orcidid>0000-0002-7830-6531 ; 0000-0001-8726-0865 ; 0000-0001-5114-1389 ; 0000-0001-6648-4608</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3732,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35188884$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Buangrab, Kusuma</creatorcontrib><creatorcontrib>Sutthacheep, Makamas</creatorcontrib><creatorcontrib>Yeemin, Thamasak</creatorcontrib><creatorcontrib>Harunari, Enjuro</creatorcontrib><creatorcontrib>Igarashi, Yasuhiro</creatorcontrib><creatorcontrib>Sripreechasak, Paranee</creatorcontrib><creatorcontrib>Kanchanasin, Pawina</creatorcontrib><creatorcontrib>Tanasupawat, Somboon</creatorcontrib><creatorcontrib>Phongsopitanun, Wongsakorn</creatorcontrib><title>Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Two new marine actinobacteria, designated as J2-1
and J2-2
, were isolated from a coral,
, collected from Rayong Province, Thailand. The taxonomic positions of the two strains were identified based on polyphasic taxonomy. Based on morphological characteristics and chemotaxonomy, strains J2-1
and J2-2
were identified as members of the genus
and
, respectively. Strains J2-1
and J2-2
showed the highest 16S rRNA gene sequence similarity to
T44
(98.62 %) and
VN05A0415
(98.08 %), respectively. Strain J2-1
had chemotaxonomic properties resembling members of the genus
. ll-Diaminopimelic acid, glucose and ribose were detected in the whole-cell hydrolysate. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositolmannoside, unidentified aminolipid and five unidentified phospholipids were detected as the polar lipids. The major cellular fatty acids were C
iso, C
anteiso, C
iso, C
, C
anteiso, C
iso and C
iso. Strain J2-2
a showed similar cell composition to members of the genus
. Both isomers of ll- and
-diaminopimelic acid were detected in the peptidoglycan. Arabinose, galactose, madurose and xylose were observed in the whole-cell hydrolysate. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, phosphatidylcholine, an unidentified phospholipid and an unidentified glycolipid. The major cellular fatty acids were C
, C
ω9
, C
10-methyl, tuberculostearic acid, C
and C
. Both strains could be distinguished from their closely related type strains according to their phenotypic characteristics. Comparative genome analysis indicated the delineation of two novel species based on digital DNA-DNA hybridization and average nucleotide identity values, which were below 70 and 95 %, respectively. The names proposed are
sp. nov. (J2-1
=TBRC 13503
=NBRC 115066
) and
sp. nov. (J2-2
=TBRC 13504
=NBRC 114885
).</description><subject>Actinobacteria - classification</subject><subject>Actinobacteria - isolation & purification</subject><subject>Animals</subject><subject>Anthozoa - microbiology</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Nucleic Acid Hybridization</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Streptomyces - classification</subject><subject>Streptomyces - isolation & purification</subject><subject>Thailand</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVUMtOwzAQtBCIlsKVI_KRAwnrJE7rI6p4iUocgLPlVyRXSRzspFX_HpeUSuxlVjszq91B6JpASoCxe7sOpkkhBaBZwU7QlBRlmVDIi9Njn5UTdBHCGiAOAM7RJKdkEauYovqj96brXbNTJmDlvKhr2ypXCyxajd9sa1zonLfiPxm6FLduk97hfutwa7YjnWjj7cZo3AgfrVio3rZORohzcYnOKlEHc3XAGfp6evxcviSr9-fX5cMqURmjfUKFlEZnUuusUhqIAi0KRhd5JBgQBlCJKqOkJBRUSY2UVaHlXMqcgpSK5jN0O-7tvPseTOh5Y4MydS3iN0PgWZmTRUnZfC9NR6nyLgRvKt55G4_fcQJ8nzD_TZgDHxOOhpvD7kE2Rh_lf5HmP5J-erQ</recordid><startdate>202202</startdate><enddate>202202</enddate><creator>Buangrab, Kusuma</creator><creator>Sutthacheep, Makamas</creator><creator>Yeemin, Thamasak</creator><creator>Harunari, Enjuro</creator><creator>Igarashi, Yasuhiro</creator><creator>Sripreechasak, Paranee</creator><creator>Kanchanasin, Pawina</creator><creator>Tanasupawat, Somboon</creator><creator>Phongsopitanun, Wongsakorn</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-7830-6531</orcidid><orcidid>https://orcid.org/0000-0001-8726-0865</orcidid><orcidid>https://orcid.org/0000-0001-5114-1389</orcidid><orcidid>https://orcid.org/0000-0001-6648-4608</orcidid></search><sort><creationdate>202202</creationdate><title>Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria</title><author>Buangrab, Kusuma ; Sutthacheep, Makamas ; Yeemin, Thamasak ; Harunari, Enjuro ; Igarashi, Yasuhiro ; Sripreechasak, Paranee ; Kanchanasin, Pawina ; Tanasupawat, Somboon ; Phongsopitanun, Wongsakorn</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c295t-5abbed2bdd2fcd01c0da495835ab901900faf2516150c65ebbf4db7bb350bbc53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Actinobacteria - classification</topic><topic>Actinobacteria - isolation & purification</topic><topic>Animals</topic><topic>Anthozoa - microbiology</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Nucleic Acid Hybridization</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Streptomyces - classification</topic><topic>Streptomyces - isolation & purification</topic><topic>Thailand</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Buangrab, Kusuma</creatorcontrib><creatorcontrib>Sutthacheep, Makamas</creatorcontrib><creatorcontrib>Yeemin, Thamasak</creatorcontrib><creatorcontrib>Harunari, Enjuro</creatorcontrib><creatorcontrib>Igarashi, Yasuhiro</creatorcontrib><creatorcontrib>Sripreechasak, Paranee</creatorcontrib><creatorcontrib>Kanchanasin, Pawina</creatorcontrib><creatorcontrib>Tanasupawat, Somboon</creatorcontrib><creatorcontrib>Phongsopitanun, Wongsakorn</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Buangrab, Kusuma</au><au>Sutthacheep, Makamas</au><au>Yeemin, Thamasak</au><au>Harunari, Enjuro</au><au>Igarashi, Yasuhiro</au><au>Sripreechasak, Paranee</au><au>Kanchanasin, Pawina</au><au>Tanasupawat, Somboon</au><au>Phongsopitanun, Wongsakorn</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2022-02</date><risdate>2022</risdate><volume>72</volume><issue>2</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Two new marine actinobacteria, designated as J2-1
and J2-2
, were isolated from a coral,
, collected from Rayong Province, Thailand. The taxonomic positions of the two strains were identified based on polyphasic taxonomy. Based on morphological characteristics and chemotaxonomy, strains J2-1
and J2-2
were identified as members of the genus
and
, respectively. Strains J2-1
and J2-2
showed the highest 16S rRNA gene sequence similarity to
T44
(98.62 %) and
VN05A0415
(98.08 %), respectively. Strain J2-1
had chemotaxonomic properties resembling members of the genus
. ll-Diaminopimelic acid, glucose and ribose were detected in the whole-cell hydrolysate. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositolmannoside, unidentified aminolipid and five unidentified phospholipids were detected as the polar lipids. The major cellular fatty acids were C
iso, C
anteiso, C
iso, C
, C
anteiso, C
iso and C
iso. Strain J2-2
a showed similar cell composition to members of the genus
. Both isomers of ll- and
-diaminopimelic acid were detected in the peptidoglycan. Arabinose, galactose, madurose and xylose were observed in the whole-cell hydrolysate. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, phosphatidylcholine, an unidentified phospholipid and an unidentified glycolipid. The major cellular fatty acids were C
, C
ω9
, C
10-methyl, tuberculostearic acid, C
and C
. Both strains could be distinguished from their closely related type strains according to their phenotypic characteristics. Comparative genome analysis indicated the delineation of two novel species based on digital DNA-DNA hybridization and average nucleotide identity values, which were below 70 and 95 %, respectively. The names proposed are
sp. nov. (J2-1
=TBRC 13503
=NBRC 115066
) and
sp. nov. (J2-2
=TBRC 13504
=NBRC 114885
).</abstract><cop>England</cop><pmid>35188884</pmid><doi>10.1099/ijsem.0.005249</doi><orcidid>https://orcid.org/0000-0002-7830-6531</orcidid><orcidid>https://orcid.org/0000-0001-8726-0865</orcidid><orcidid>https://orcid.org/0000-0001-5114-1389</orcidid><orcidid>https://orcid.org/0000-0001-6648-4608</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2022-02, Vol.72 (2) |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2631865975 |
| source | MEDLINE; Microbiology Society; Alma/SFX Local Collection; EZB Electronic Journals Library |
| subjects | Actinobacteria - classification Actinobacteria - isolation & purification Animals Anthozoa - microbiology Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Nucleic Acid Hybridization Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Streptomyces - classification Streptomyces - isolation & purification Thailand |
| title | Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria |
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