Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree
A nitrogen-fixing, endospore-forming, motile, rod-shaped, facultative aerobic bacterium, designated 81-11 , was isolated from rhizosphere soil of a peach tree collected from Handan, Hebei, PR China. From the comparison of 16S rRNA gene sequence, the strain is most closely related to DSM 27463 (96.9 ...
Gespeichert in:
| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2022-01, Vol.72 (1) |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | 1 |
| container_start_page | |
| container_title | International journal of systematic and evolutionary microbiology |
| container_volume | 72 |
| creator | Li, Qin Zuo, Yin-Zhao Gao, Miao Chen, San-Feng |
| description | A nitrogen-fixing, endospore-forming, motile, rod-shaped, facultative aerobic bacterium, designated 81-11
, was isolated from rhizosphere soil of a peach tree collected from Handan, Hebei, PR China. From the comparison of 16S rRNA gene sequence, the strain is most closely related to
DSM 27463
(96.9 %) and
DSM 23593
(96.7 %). The genome size of strain 81-11
was 4.4 Mb, comprising 4879 predicted genes with a DNA G+C content of 50.0 mol%. The average nucleotide identity values of genome sequences between the novel isolate and the type strains of related species
DSM 27463
and
DSM 23593
were 71.8 and 72.1 %, respectively. The major cellular fatty acids were anteiso-C
(47.8 %), iso-C
(15.5 %) and iso-C
(13.0 %). Menaquinone-7 was the major respiratory quinone. The polar lipids contained phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid, aminoglycopid, unknown polar lipids and unidentified aminophosphoglycolipid. Based on phylogenetic, genomic and phenotypic characteristics, strain 81-11
was classified as a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain of
is 81-11
(=JCM 34618
=CGMCC 1.18907
). |
| doi_str_mv | 10.1099/ijsem.0.005216 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2624656203</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2624656203</sourcerecordid><originalsourceid>FETCH-LOGICAL-c250t-9390123f7c739ce2167b57ab714a38c2e0626e48e762af856d22d0e26aad9a2a3</originalsourceid><addsrcrecordid>eNo9kDtPwzAUhS0EoqWwMiKPDCRc24nTjKjiJVWCAWbLcW4aV0kc7AQBv55AC9N9nXOk-xFyziBmkOfXdhuwjSEGSDmTB2TOEimjFERy-N9zOSMnIWwBpgXAMZmJlE0DiDmxzxo7W2hjm2YM1OjR0tDHtHPv8RXVtLODdxvsosp-2G4z3dBYDNQG1-gBS1p519KhRupr--VCX6NHGpxtqKsmf4_a1HTwiKfkqNJNwLN9XZDXu9uX1UO0frp_XN2sI8NTGKJc5MC4qDKTidzg9FRWpJkuMpZosTQcQXKJyRIzyXW1TGXJeQnIpdZlrrkWC3K5y-29exsxDKq1wWDT6A7dGBSXPJGp5CAmabyTGu9C8Fip3ttW-0_FQP3gVb94Fagd3slwsc8eixbLf_kfT_ENO_J2fQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2624656203</pqid></control><display><type>article</type><title>Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree</title><source>MEDLINE</source><source>Microbiology Society</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Li, Qin ; Zuo, Yin-Zhao ; Gao, Miao ; Chen, San-Feng</creator><creatorcontrib>Li, Qin ; Zuo, Yin-Zhao ; Gao, Miao ; Chen, San-Feng</creatorcontrib><description>A nitrogen-fixing, endospore-forming, motile, rod-shaped, facultative aerobic bacterium, designated 81-11
, was isolated from rhizosphere soil of a peach tree collected from Handan, Hebei, PR China. From the comparison of 16S rRNA gene sequence, the strain is most closely related to
DSM 27463
(96.9 %) and
DSM 23593
(96.7 %). The genome size of strain 81-11
was 4.4 Mb, comprising 4879 predicted genes with a DNA G+C content of 50.0 mol%. The average nucleotide identity values of genome sequences between the novel isolate and the type strains of related species
DSM 27463
and
DSM 23593
were 71.8 and 72.1 %, respectively. The major cellular fatty acids were anteiso-C
(47.8 %), iso-C
(15.5 %) and iso-C
(13.0 %). Menaquinone-7 was the major respiratory quinone. The polar lipids contained phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid, aminoglycopid, unknown polar lipids and unidentified aminophosphoglycolipid. Based on phylogenetic, genomic and phenotypic characteristics, strain 81-11
was classified as a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain of
is 81-11
(=JCM 34618
=CGMCC 1.18907
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005216</identifier><identifier>PMID: 35100103</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; China ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Nitrogen - metabolism ; Nitrogen Fixation ; Paenibacillus - classification ; Paenibacillus - isolation & purification ; Phospholipids - chemistry ; Phylogeny ; Prunus persica - microbiology ; Rhizosphere ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2022-01, Vol.72 (1)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c250t-9390123f7c739ce2167b57ab714a38c2e0626e48e762af856d22d0e26aad9a2a3</cites><orcidid>0000-0001-6232-1369 ; 0000-0002-6264-275X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35100103$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Qin</creatorcontrib><creatorcontrib>Zuo, Yin-Zhao</creatorcontrib><creatorcontrib>Gao, Miao</creatorcontrib><creatorcontrib>Chen, San-Feng</creatorcontrib><title>Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A nitrogen-fixing, endospore-forming, motile, rod-shaped, facultative aerobic bacterium, designated 81-11
, was isolated from rhizosphere soil of a peach tree collected from Handan, Hebei, PR China. From the comparison of 16S rRNA gene sequence, the strain is most closely related to
DSM 27463
(96.9 %) and
DSM 23593
(96.7 %). The genome size of strain 81-11
was 4.4 Mb, comprising 4879 predicted genes with a DNA G+C content of 50.0 mol%. The average nucleotide identity values of genome sequences between the novel isolate and the type strains of related species
DSM 27463
and
DSM 23593
were 71.8 and 72.1 %, respectively. The major cellular fatty acids were anteiso-C
(47.8 %), iso-C
(15.5 %) and iso-C
(13.0 %). Menaquinone-7 was the major respiratory quinone. The polar lipids contained phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid, aminoglycopid, unknown polar lipids and unidentified aminophosphoglycolipid. Based on phylogenetic, genomic and phenotypic characteristics, strain 81-11
was classified as a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain of
is 81-11
(=JCM 34618
=CGMCC 1.18907
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>China</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Nitrogen - metabolism</subject><subject>Nitrogen Fixation</subject><subject>Paenibacillus - classification</subject><subject>Paenibacillus - isolation & purification</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>Prunus persica - microbiology</subject><subject>Rhizosphere</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kDtPwzAUhS0EoqWwMiKPDCRc24nTjKjiJVWCAWbLcW4aV0kc7AQBv55AC9N9nXOk-xFyziBmkOfXdhuwjSEGSDmTB2TOEimjFERy-N9zOSMnIWwBpgXAMZmJlE0DiDmxzxo7W2hjm2YM1OjR0tDHtHPv8RXVtLODdxvsosp-2G4z3dBYDNQG1-gBS1p519KhRupr--VCX6NHGpxtqKsmf4_a1HTwiKfkqNJNwLN9XZDXu9uX1UO0frp_XN2sI8NTGKJc5MC4qDKTidzg9FRWpJkuMpZosTQcQXKJyRIzyXW1TGXJeQnIpdZlrrkWC3K5y-29exsxDKq1wWDT6A7dGBSXPJGp5CAmabyTGu9C8Fip3ttW-0_FQP3gVb94Fagd3slwsc8eixbLf_kfT_ENO_J2fQ</recordid><startdate>20220101</startdate><enddate>20220101</enddate><creator>Li, Qin</creator><creator>Zuo, Yin-Zhao</creator><creator>Gao, Miao</creator><creator>Chen, San-Feng</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6232-1369</orcidid><orcidid>https://orcid.org/0000-0002-6264-275X</orcidid></search><sort><creationdate>20220101</creationdate><title>Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree</title><author>Li, Qin ; Zuo, Yin-Zhao ; Gao, Miao ; Chen, San-Feng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c250t-9390123f7c739ce2167b57ab714a38c2e0626e48e762af856d22d0e26aad9a2a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>China</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Nitrogen - metabolism</topic><topic>Nitrogen Fixation</topic><topic>Paenibacillus - classification</topic><topic>Paenibacillus - isolation & purification</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>Prunus persica - microbiology</topic><topic>Rhizosphere</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Qin</creatorcontrib><creatorcontrib>Zuo, Yin-Zhao</creatorcontrib><creatorcontrib>Gao, Miao</creatorcontrib><creatorcontrib>Chen, San-Feng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Qin</au><au>Zuo, Yin-Zhao</au><au>Gao, Miao</au><au>Chen, San-Feng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2022-01-01</date><risdate>2022</risdate><volume>72</volume><issue>1</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A nitrogen-fixing, endospore-forming, motile, rod-shaped, facultative aerobic bacterium, designated 81-11
, was isolated from rhizosphere soil of a peach tree collected from Handan, Hebei, PR China. From the comparison of 16S rRNA gene sequence, the strain is most closely related to
DSM 27463
(96.9 %) and
DSM 23593
(96.7 %). The genome size of strain 81-11
was 4.4 Mb, comprising 4879 predicted genes with a DNA G+C content of 50.0 mol%. The average nucleotide identity values of genome sequences between the novel isolate and the type strains of related species
DSM 27463
and
DSM 23593
were 71.8 and 72.1 %, respectively. The major cellular fatty acids were anteiso-C
(47.8 %), iso-C
(15.5 %) and iso-C
(13.0 %). Menaquinone-7 was the major respiratory quinone. The polar lipids contained phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid, aminoglycopid, unknown polar lipids and unidentified aminophosphoglycolipid. Based on phylogenetic, genomic and phenotypic characteristics, strain 81-11
was classified as a novel species within the genus
, for which the name
sp. nov. is proposed. The type strain of
is 81-11
(=JCM 34618
=CGMCC 1.18907
).</abstract><cop>England</cop><pmid>35100103</pmid><doi>10.1099/ijsem.0.005216</doi><orcidid>https://orcid.org/0000-0001-6232-1369</orcidid><orcidid>https://orcid.org/0000-0002-6264-275X</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2022-01, Vol.72 (1) |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2624656203 |
| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition China DNA, Bacterial - genetics Fatty Acids - chemistry Nitrogen - metabolism Nitrogen Fixation Paenibacillus - classification Paenibacillus - isolation & purification Phospholipids - chemistry Phylogeny Prunus persica - microbiology Rhizosphere RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-05T01%3A23%3A15IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Paenibacillus%20caui%20sp.%20nov.,%20a%20nitrogen-fixing%20species%20isolated%20from%20the%20rhizosphere%20soil%20of%20a%20peach%20tree&rft.jtitle=International%20journal%20of%20systematic%20and%20evolutionary%20microbiology&rft.au=Li,%20Qin&rft.date=2022-01-01&rft.volume=72&rft.issue=1&rft.issn=1466-5026&rft.eissn=1466-5034&rft_id=info:doi/10.1099/ijsem.0.005216&rft_dat=%3Cproquest_cross%3E2624656203%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2624656203&rft_id=info:pmid/35100103&rfr_iscdi=true |