Making it Rain: Cloud-Based Molecular Simulations for Everyone

We present a user-friendly front-end for running molecular dynamics (MD) simulations using the OpenMM toolkit on the Google Colab framework. Our goals are (1) to highlight the usage of a cloud-computing scheme for educational purposes for a hands-on approach when learning MD simulations and (2) to e...

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Veröffentlicht in:Journal of chemical information and modeling 2021-10, Vol.61 (10), p.4852-4856
Hauptverfasser: Arantes, Pablo R, Polêto, Marcelo D, Pedebos, Conrado, Ligabue-Braun, Rodrigo
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Sprache:eng
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Zusammenfassung:We present a user-friendly front-end for running molecular dynamics (MD) simulations using the OpenMM toolkit on the Google Colab framework. Our goals are (1) to highlight the usage of a cloud-computing scheme for educational purposes for a hands-on approach when learning MD simulations and (2) to exemplify how low-income research groups can perform MD simulations in the microsecond time scale. We hope this work facilitates teaching and learning of molecular simulation throughout the community.
ISSN:1549-9596
1549-960X
DOI:10.1021/acs.jcim.1c00998