A new method for investigating microbiota-produced small molecules in adenomatous polyps

The intestinal microbiota is composed of a large number of different bacteria that produce a variety of metabolites. Colorectal cancer, which typically develops from adenomatous polyps, is highly influenced by microbiota. Since a variety of molecular changes may occur as these polyps transform from benign tumor to malignant carcinoma, the ability to study the microbiota-produced metabolites can lead to new discoveries about the development and progression of this cancer. However, to address the complexity of the microbiota-produced molecules, novel methods are needed. To this aim, in the present work, we developed a high-throughput metabolomics method to capture the metabolic complexity of the microbiota metabolome adherent to adenomatous polyps and adenocarcinoma. For the first time, the method enables the simultaneous quantification of almost 300 metabolites, while preserving the integrity of the original sample. The metabolomics approach was analytically validated and had excellent performances in terms of recovery, linearity, specificity, intra- and inter-day precision, limits of detection, and quantification. Furthermore, the clinical potential of the method was demonstrated in adenoma collected for a colorectal adenoma study. [Display omitted] •Validated non-invasive metabolomics method for quantitative analysis of microbiota-produced small molecules.•Ability to extract small molecules directly produced by the microbiota adherent to the surface of an adenoma.•Simultaneous identification and quantification of almost 300 metabolites.•Ability to investigate the microbiota-produced small molecules associated with histologic grade of dysplasia.