LAMP assay coupled with CRISPR/Cas12a system for portable detection of African swine fever virus

African swine fever (ASF) is one of the most severe infectious diseases of pigs. In this study, a loop‐mediated isothermal amplification (LAMP) assay coupled with the clustered regularly interspaced short palindromic repeats (CRISPR)/Cas12a system was established in one tube for the detection of the...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Transboundary and emerging diseases 2022-07, Vol.69 (4), p.e216-e223
Hauptverfasser: Yang, Bo, Shi, Zhengwang, Ma, Yuan, Wang, Lijuan, Cao, Liyan, Luo, Juncong, Wan, Ying, Song, Rui, Yan, Yiyong, Yuan, Kehu, Tian, Hong, Zheng, Haixue
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:African swine fever (ASF) is one of the most severe infectious diseases of pigs. In this study, a loop‐mediated isothermal amplification (LAMP) assay coupled with the clustered regularly interspaced short palindromic repeats (CRISPR)/Cas12a system was established in one tube for the detection of the African swine fever virus (ASFV) p72 gene. The single‐stranded DNA–fluorophore quencher reporter and CRISPR‐derived RNA were screened and selected for the CRISPR detection system. In combination with LAMP amplification assay, the detection limit for the LAMP–CRISPR assay can reach 7 copies/μl of p72 gene per reaction. Furthermore, this method displays no cross‐reactivity with other porcine DNA or RNA viruses. The performance of the LAMP–CRISPR assay was compared with real‐time qPCR tests for clinical samples; a good consistency between the LAMP–CRISPR assay and real‐time qPCR was observed. The method shed a light on the convenient, portable, low cost, highly sensitive and specific detection of ASFV, demonstrating a great application potential for monitoring on‐site ASFV in the field.
ISSN:1865-1674
1865-1682
DOI:10.1111/tbed.14285