Pseudoxanthomonas beigongshangi sp. nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu
A Gram-negative and rod-shape bacterium designated REN9 T , was isolated from pit mud of Baijiu in Sichuan, China. The 16S rRNA sequence of strain REN9 T had a high similarity to Pseudoxanthomonas indica P15 T (99.21%), P. mexicana AMX 26B T (97.74%) and P. japonensis 12-3 T (97.43%). Phylogenetic a...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2021-08, Vol.114 (8), p.1307-1314 |
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| creator | Sun, Zhanbin Dai, Fang Yan, Yi Guo, Liyin Gu, Haoyue Xu, Jialiang Ren, Qing |
| description | A Gram-negative and rod-shape bacterium designated REN9
T
, was isolated from pit mud of Baijiu in Sichuan, China. The 16S rRNA sequence of strain REN9
T
had a high similarity to
Pseudoxanthomonas indica
P15
T
(99.21%),
P. mexicana
AMX 26B
T
(97.74%) and
P. japonensis
12-3
T
(97.43%). Phylogenetic analysis showed that REN9
T
belongs to the genus
Pseudoxanthomonas
and formed distinct cluster. The ANI and DDH values between strains REN9
T
and P15
T
were 80.94% and 24%, respectively. Strain REN9
T
grew optimally at 37 °C, pH 7.0 and 2% NaCl. PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and DPG (diphosphatidylglycerol) were the major polar lipids of REN9
T
. Ubiquinone 8 (Q-8) was the predominant quinone, and Iso-C
15:0
(64.32%), anteiso-C
15:0
(12.04%) and Iso-C
14:0
(4.56%) were the majority fatty acids. The DNA G + C content of strain REN9
T
was 67.3 mol%. Genomic analysis showed that strain REN9
T
had two secondary metabolite biosynthesis gene clusters. Moreover, strain REN9
T
had 43 glycoside hydrolases, 41 glycosyl transferases and 41 carbohydrate esterases. Based on the polyphasic taxonomic analysis, strain REN9
T
is recommended as a novel species within the genus
Pseudoxanthomonas
, for which the name
Pseudoxanthomonas beigongshangi
is proposed. The type stain is REN9
T
(= JCM 33961
T
= GDMCC 1.2210
T
). |
| doi_str_mv | 10.1007/s10482-021-01603-w |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2540516214</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2552759427</sourcerecordid><originalsourceid>FETCH-LOGICAL-c352t-27bab74ec8e303c229ee15d913cf93b4e2ca615beec98fab55335ac5b63314bf3</originalsourceid><addsrcrecordid>eNp9kc9q3DAQxkVoIJu0L9CToJcc4q3-WPbqmIa0CQTSQ3IWkjze1WJLriR3k3foQ0dbFwo99DQz3_y-YeBD6CMla0pI-zlRUm9YRRitCG0Irw4naEVFyyrZSPkOrQgpYkNadobOU9qXUTabdoV-fU8wd-FF-7wLY_A6YQNuG_w27bTfOpymNfbh5_oK62OFARttM0Sn8cHlHZ4idK4IHfYuR5cBa7_0uvRlOdsiGTe4_IpdCoM-sn0MI55cxuPc4dDjL9rt3fwenfZ6SPDhT71Az19vn27uqofHb_c31w-V5YLlirVGm7YGuwFOuGVMAlDRScptL7mpgVndUGEArNz02gjBudBWmIZzWpueX6DL5e4Uw48ZUlajSxaGQXsIc1JM1ETQhtG6oJ_-Qfdhjr58VyjBWiFr1haKLZSNIaUIvZqiG3V8VZSoY0BqCUiVgNTvgNShmPhiSgX2W4h_T__H9QYgVZZZ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2552759427</pqid></control><display><type>article</type><title>Pseudoxanthomonas beigongshangi sp. nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu</title><source>SpringerLink Journals</source><creator>Sun, Zhanbin ; Dai, Fang ; Yan, Yi ; Guo, Liyin ; Gu, Haoyue ; Xu, Jialiang ; Ren, Qing</creator><creatorcontrib>Sun, Zhanbin ; Dai, Fang ; Yan, Yi ; Guo, Liyin ; Gu, Haoyue ; Xu, Jialiang ; Ren, Qing</creatorcontrib><description>A Gram-negative and rod-shape bacterium designated REN9
T
, was isolated from pit mud of Baijiu in Sichuan, China. The 16S rRNA sequence of strain REN9
T
had a high similarity to
Pseudoxanthomonas indica
P15
T
(99.21%),
P. mexicana
AMX 26B
T
(97.74%) and
P. japonensis
12-3
T
(97.43%). Phylogenetic analysis showed that REN9
T
belongs to the genus
Pseudoxanthomonas
and formed distinct cluster. The ANI and DDH values between strains REN9
T
and P15
T
were 80.94% and 24%, respectively. Strain REN9
T
grew optimally at 37 °C, pH 7.0 and 2% NaCl. PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and DPG (diphosphatidylglycerol) were the major polar lipids of REN9
T
. Ubiquinone 8 (Q-8) was the predominant quinone, and Iso-C
15:0
(64.32%), anteiso-C
15:0
(12.04%) and Iso-C
14:0
(4.56%) were the majority fatty acids. The DNA G + C content of strain REN9
T
was 67.3 mol%. Genomic analysis showed that strain REN9
T
had two secondary metabolite biosynthesis gene clusters. Moreover, strain REN9
T
had 43 glycoside hydrolases, 41 glycosyl transferases and 41 carbohydrate esterases. Based on the polyphasic taxonomic analysis, strain REN9
T
is recommended as a novel species within the genus
Pseudoxanthomonas
, for which the name
Pseudoxanthomonas beigongshangi
is proposed. The type stain is REN9
T
(= JCM 33961
T
= GDMCC 1.2210
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-021-01603-w</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Bacteria ; Biomedical and Life Sciences ; Biosynthesis ; Carbohydrates ; Cardiolipin ; Deoxyribonucleic acid ; DNA ; Enzymes ; Esterases ; Fatty acids ; Gene clusters ; Genes ; Genomes ; Genomic analysis ; Glycosidases ; Glycoside hydrolase ; Life Sciences ; Lipids ; Medical Microbiology ; Metabolites ; Microbiology ; Morphology ; Mud ; New species ; Original Paper ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phylogenetics ; Phylogeny ; Physiology ; Plant Sciences ; Pseudoxanthomonas ; Quinones ; rRNA 16S ; Sodium chloride ; Soil Science & Conservation ; Taxonomy ; Ubiquinone</subject><ispartof>Antonie van Leeuwenhoek, 2021-08, Vol.114 (8), p.1307-1314</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021</rights><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c352t-27bab74ec8e303c229ee15d913cf93b4e2ca615beec98fab55335ac5b63314bf3</citedby><cites>FETCH-LOGICAL-c352t-27bab74ec8e303c229ee15d913cf93b4e2ca615beec98fab55335ac5b63314bf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-021-01603-w$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-021-01603-w$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Sun, Zhanbin</creatorcontrib><creatorcontrib>Dai, Fang</creatorcontrib><creatorcontrib>Yan, Yi</creatorcontrib><creatorcontrib>Guo, Liyin</creatorcontrib><creatorcontrib>Gu, Haoyue</creatorcontrib><creatorcontrib>Xu, Jialiang</creatorcontrib><creatorcontrib>Ren, Qing</creatorcontrib><title>Pseudoxanthomonas beigongshangi sp. nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><description>A Gram-negative and rod-shape bacterium designated REN9
T
, was isolated from pit mud of Baijiu in Sichuan, China. The 16S rRNA sequence of strain REN9
T
had a high similarity to
Pseudoxanthomonas indica
P15
T
(99.21%),
P. mexicana
AMX 26B
T
(97.74%) and
P. japonensis
12-3
T
(97.43%). Phylogenetic analysis showed that REN9
T
belongs to the genus
Pseudoxanthomonas
and formed distinct cluster. The ANI and DDH values between strains REN9
T
and P15
T
were 80.94% and 24%, respectively. Strain REN9
T
grew optimally at 37 °C, pH 7.0 and 2% NaCl. PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and DPG (diphosphatidylglycerol) were the major polar lipids of REN9
T
. Ubiquinone 8 (Q-8) was the predominant quinone, and Iso-C
15:0
(64.32%), anteiso-C
15:0
(12.04%) and Iso-C
14:0
(4.56%) were the majority fatty acids. The DNA G + C content of strain REN9
T
was 67.3 mol%. Genomic analysis showed that strain REN9
T
had two secondary metabolite biosynthesis gene clusters. Moreover, strain REN9
T
had 43 glycoside hydrolases, 41 glycosyl transferases and 41 carbohydrate esterases. Based on the polyphasic taxonomic analysis, strain REN9
T
is recommended as a novel species within the genus
Pseudoxanthomonas
, for which the name
Pseudoxanthomonas beigongshangi
is proposed. The type stain is REN9
T
(= JCM 33961
T
= GDMCC 1.2210
T
).</description><subject>Bacteria</subject><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Carbohydrates</subject><subject>Cardiolipin</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Enzymes</subject><subject>Esterases</subject><subject>Fatty acids</subject><subject>Gene clusters</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Glycosidases</subject><subject>Glycoside hydrolase</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Metabolites</subject><subject>Microbiology</subject><subject>Morphology</subject><subject>Mud</subject><subject>New species</subject><subject>Original Paper</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Plant Sciences</subject><subject>Pseudoxanthomonas</subject><subject>Quinones</subject><subject>rRNA 16S</subject><subject>Sodium chloride</subject><subject>Soil Science & Conservation</subject><subject>Taxonomy</subject><subject>Ubiquinone</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kc9q3DAQxkVoIJu0L9CToJcc4q3-WPbqmIa0CQTSQ3IWkjze1WJLriR3k3foQ0dbFwo99DQz3_y-YeBD6CMla0pI-zlRUm9YRRitCG0Irw4naEVFyyrZSPkOrQgpYkNadobOU9qXUTabdoV-fU8wd-FF-7wLY_A6YQNuG_w27bTfOpymNfbh5_oK62OFARttM0Sn8cHlHZ4idK4IHfYuR5cBa7_0uvRlOdsiGTe4_IpdCoM-sn0MI55cxuPc4dDjL9rt3fwenfZ6SPDhT71Az19vn27uqofHb_c31w-V5YLlirVGm7YGuwFOuGVMAlDRScptL7mpgVndUGEArNz02gjBudBWmIZzWpueX6DL5e4Uw48ZUlajSxaGQXsIc1JM1ETQhtG6oJ_-Qfdhjr58VyjBWiFr1haKLZSNIaUIvZqiG3V8VZSoY0BqCUiVgNTvgNShmPhiSgX2W4h_T__H9QYgVZZZ</recordid><startdate>20210801</startdate><enddate>20210801</enddate><creator>Sun, Zhanbin</creator><creator>Dai, Fang</creator><creator>Yan, Yi</creator><creator>Guo, Liyin</creator><creator>Gu, Haoyue</creator><creator>Xu, Jialiang</creator><creator>Ren, Qing</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20210801</creationdate><title>Pseudoxanthomonas beigongshangi sp. nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu</title><author>Sun, Zhanbin ; Dai, Fang ; Yan, Yi ; Guo, Liyin ; Gu, Haoyue ; Xu, Jialiang ; Ren, Qing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c352t-27bab74ec8e303c229ee15d913cf93b4e2ca615beec98fab55335ac5b63314bf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Bacteria</topic><topic>Biomedical and Life Sciences</topic><topic>Biosynthesis</topic><topic>Carbohydrates</topic><topic>Cardiolipin</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Enzymes</topic><topic>Esterases</topic><topic>Fatty acids</topic><topic>Gene clusters</topic><topic>Genes</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>Glycosidases</topic><topic>Glycoside hydrolase</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>Metabolites</topic><topic>Microbiology</topic><topic>Morphology</topic><topic>Mud</topic><topic>New species</topic><topic>Original Paper</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Physiology</topic><topic>Plant Sciences</topic><topic>Pseudoxanthomonas</topic><topic>Quinones</topic><topic>rRNA 16S</topic><topic>Sodium chloride</topic><topic>Soil Science & Conservation</topic><topic>Taxonomy</topic><topic>Ubiquinone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Zhanbin</creatorcontrib><creatorcontrib>Dai, Fang</creatorcontrib><creatorcontrib>Yan, Yi</creatorcontrib><creatorcontrib>Guo, Liyin</creatorcontrib><creatorcontrib>Gu, Haoyue</creatorcontrib><creatorcontrib>Xu, Jialiang</creatorcontrib><creatorcontrib>Ren, Qing</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central 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nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><date>2021-08-01</date><risdate>2021</risdate><volume>114</volume><issue>8</issue><spage>1307</spage><epage>1314</epage><pages>1307-1314</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A Gram-negative and rod-shape bacterium designated REN9
T
, was isolated from pit mud of Baijiu in Sichuan, China. The 16S rRNA sequence of strain REN9
T
had a high similarity to
Pseudoxanthomonas indica
P15
T
(99.21%),
P. mexicana
AMX 26B
T
(97.74%) and
P. japonensis
12-3
T
(97.43%). Phylogenetic analysis showed that REN9
T
belongs to the genus
Pseudoxanthomonas
and formed distinct cluster. The ANI and DDH values between strains REN9
T
and P15
T
were 80.94% and 24%, respectively. Strain REN9
T
grew optimally at 37 °C, pH 7.0 and 2% NaCl. PE (phosphatidylethanolamine), PG (phosphatidylglycerol) and DPG (diphosphatidylglycerol) were the major polar lipids of REN9
T
. Ubiquinone 8 (Q-8) was the predominant quinone, and Iso-C
15:0
(64.32%), anteiso-C
15:0
(12.04%) and Iso-C
14:0
(4.56%) were the majority fatty acids. The DNA G + C content of strain REN9
T
was 67.3 mol%. Genomic analysis showed that strain REN9
T
had two secondary metabolite biosynthesis gene clusters. Moreover, strain REN9
T
had 43 glycoside hydrolases, 41 glycosyl transferases and 41 carbohydrate esterases. Based on the polyphasic taxonomic analysis, strain REN9
T
is recommended as a novel species within the genus
Pseudoxanthomonas
, for which the name
Pseudoxanthomonas beigongshangi
is proposed. The type stain is REN9
T
(= JCM 33961
T
= GDMCC 1.2210
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s10482-021-01603-w</doi><tpages>8</tpages></addata></record> |
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| ispartof | Antonie van Leeuwenhoek, 2021-08, Vol.114 (8), p.1307-1314 |
| issn | 0003-6072 1572-9699 |
| language | eng |
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| source | SpringerLink Journals |
| subjects | Bacteria Biomedical and Life Sciences Biosynthesis Carbohydrates Cardiolipin Deoxyribonucleic acid DNA Enzymes Esterases Fatty acids Gene clusters Genes Genomes Genomic analysis Glycosidases Glycoside hydrolase Life Sciences Lipids Medical Microbiology Metabolites Microbiology Morphology Mud New species Original Paper Phosphatidylethanolamine Phosphatidylglycerol Phylogenetics Phylogeny Physiology Plant Sciences Pseudoxanthomonas Quinones rRNA 16S Sodium chloride Soil Science & Conservation Taxonomy Ubiquinone |
| title | Pseudoxanthomonas beigongshangi sp. nov., a novel bacteria with predicted nitrite and nitrate reduce ability isolated from pit mud of Baijiu |
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