The complete chloroplast genome sequence of Altingia yunnanensis

The complete chloroplast genome sequence of Altingia yunnanensis

The first complete chloroplast genome (cpDNA) sequence of Altingia yunnanensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,860 bp in length, contains a large single-copy region (LSC) of 89,162 bp and a small single-copy region (SSC) of 19,008 bp, which...

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Veröffentlicht in:Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.1050-1051
Hauptverfasser: Qiu, Qiong, Yang, Dejun, Xu, Linhong, Xu, Yumei, Wang, Yi
Format: Artikel
Sprache:eng
Schlagworte:
Altingia yunnanensis
chloroplast
Chloroplasts
Genomes
Illumina sequencing
Inverted repeat
Mitogenome Announcement
Nucleotide sequence
phylogenetic analysis
rRNA
Transfer RNA
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Zusammenfassung:The first complete chloroplast genome (cpDNA) sequence of Altingia yunnanensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,860 bp in length, contains a large single-copy region (LSC) of 89,162 bp and a small single-copy region (SSC) of 19,008 bp, which were separated by a pair of inverted repeat (IR) regions of 26,325 bp each. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further, the phylogenomic analysis showed that A. yunnanensis and Altingia excelsa clustered in a clade in Saxifragales order.
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2020.1721369