AlignmentViewer: Sequence Analysis of Large Protein Families [version 1; peer review: 1 approved, 1 approved with reservations]

AlignmentViewer: Sequence Analysis of Large Protein Families [version 1; peer review: 1 approved, 1 approved with reservations]

AlignmentViewer is a web-based tool used to view and analyze multiple sequence alignments of protein families. The particular strengths of AlignmentViewer include flexible visualization at different scales as well as analysis of conservation patterns and of the distribution of proteins in sequence s...

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Veröffentlicht in:F1000 research 2020, Vol.9, p.213
Hauptverfasser: Reguant, Roc, Antipin, Yevgeniy, Sheridan, Rob, Dallago, Christian, Diamantoukos, Drew, Luna, Augustin, Sander, Chris, Gauthier, Nicholas Paul
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container_end_page
container_issue
container_start_page 213
container_title F1000 research
container_volume 9
creator Reguant, Roc
Antipin, Yevgeniy
Sheridan, Rob
Dallago, Christian
Diamantoukos, Drew
Luna, Augustin
Sander, Chris
Gauthier, Nicholas Paul
description AlignmentViewer is a web-based tool used to view and analyze multiple sequence alignments of protein families. The particular strengths of AlignmentViewer include flexible visualization at different scales as well as analysis of conservation patterns and of the distribution of proteins in sequence space. The tool is directly accessible in web browsers without the need for software installation. It can handle protein families with tens of thousands of sequences and is particularly suitable for evolutionary coupling analysis, e.g. via EVcouplings.org. AlignmentViewer is open source software under the MIT license. The viewer is available at http://alignmentviewer.org and the source code, documentation and issue tracking are available at https://github.com/sanderlab/alignmentviewer
doi_str_mv 10.12688/f1000research.22242.1
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title AlignmentViewer: Sequence Analysis of Large Protein Families [version 1; peer review: 1 approved, 1 approved with reservations]
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