Method to generate a large cohort in-silico for type 1 diabetes
•Large in-silico cohort for type 1 diabetes is generated through linear regression.•Linear regression uses covariance to generate large cohorts through published data.•The overlapping dynamics is tested by an algorithm of clustering.•Covariant and random cohorts are compared their qualitative behavi...
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Veröffentlicht in: | Computer methods and programs in biomedicine 2020-09, Vol.193, p.105523-105523, Article 105523 |
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Zusammenfassung: | •Large in-silico cohort for type 1 diabetes is generated through linear regression.•Linear regression uses covariance to generate large cohorts through published data.•The overlapping dynamics is tested by an algorithm of clustering.•Covariant and random cohorts are compared their qualitative behaviour.•The methodology to obtain a large cohort can be extended to any science problem.
Background and objective: In the last decade, several technological solutions have been proposed as artificial pancreas systems able to treat type 1 diabetes; most often they are built based on a control algorithm that needs to be validated before it is used with real patients. Control algorithms are usually tested with simulation tools that integrate mathematical models related mainly to the glucose-insulin dynamics, but other variables can be considered as well. In general, the simulators have a limited set of subjects. The main goal of this paper is to propose a new computational method to increase the number of virtual subjects, with physiological characteristics, included in the original mathematical models. Methods: A subject is defined by a set of parameters given by a mathematical model. From the available reduced number of subjects in the model, the covariance of each parameter of every subject is obtained to establish a mathematical relationship. Then, new sets of parameters are calculated using linear regression methods; this generates larger cohorts, which allows for testing insulin therapies in open-loop or closed-loop scenarios. The new method proposed here increases the number of subjects in a virtual cohort using two versions of Hovorka’s mathematical model. Results:Two covariant cohorts are obtained with linear regression. Both cohorts are clustered to avoid overlapping in the glucose-insulin dynamics and are compared in terms of their qualitative and quantitative behaviours in the normoglycemic range. As a result, there have been generated two larger cohorts (256 subjects) than the original population, which contributes to improving the variability in in-silico tests. In addition, for analysing the characteristics of the covariant generation method, two random cohorts have been generated, where the parameters are obtained individually and independently from each other, exhibiting only distribution limitations so that these cohorts do not have physiological subjects. Conclusions: The proposed methodology has enabled the generation of a large cohort of 256 subje |
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ISSN: | 0169-2607 1872-7565 |
DOI: | 10.1016/j.cmpb.2020.105523 |