Reactor configuration influences microbial community structure during high-rate, low-temperature anaerobic treatment of dairy wastewater

[Display omitted] •High-rate anaerobic treatment of dairy wastewater is feasible at 15 °C.•Reactor configuration is an important consideration.•Protein degradation was identified as a rate-limiting step at low-temperatures.•low-temperatures reduced microbial diversity, but performance remained stable.•Lactococcus was identified as a potential key genus. Low temperature anaerobic digestion remains in its infancy, despite increasing interest for the treatment of complex wastewaters. In this study, the feasibility of low-temperature anaerobic treatment of dairy wastewater was assessed during a 443-day laboratory-scale bioreactor trial. The bioreactors were operated in triplicate at organic loading rates of 7.5–9 kgCODm−3d−1 throughout five operational phases. The structure of the microbial community was analysed using quantitative real-time PCR and amplicon sequencing of 16S rRNA genes from DNA and rRNA. The results indicated that low-temperature treatment of dairy wastewater is feasible at 15 °C, but that reactor configuration remains extremely important. The upflow anaerobic sludge bed (UASB) configuration out-performed the expanded granular sludge bed (EGSB)-based configurations. Decreased temperatures resulted in significant reductions in microbiome diversity. Methanosaeta was identified as a dominant genus throughout the trial, while Lactococcus was identified as an important bacterial genus at low-temperatures. However, the relative abundance of Lactococcus was significantly influenced by reactor configuration.