Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan
A strain-designated Ys T was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. Ys T is aerobic, Gram-negative, and slender rod shaped. Ys T grew optimally at 30 °C, pH 7.0–8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone....
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description | A strain-designated Ys
T
was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. Ys
T
is aerobic, Gram-negative, and slender rod shaped. Ys
T
grew optimally at 30 °C, pH 7.0–8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone. The main cellular polar lipids were phosphatidylethanolamine and unidentified amino- and polar-lipids. The predominant cellular fatty acids were C
18:0
,
iso
-C
14:0
and
iso
-C
15:0
. Phylogenetic analysis of 16S rRNA gene sequence revealed the nearest neighbours of strain Ys
T
to be members of the
Ohtaekwangia
and
Chryseolinea
genera with 91.2–92.1% sequence similarity. The percentages of conserved proteins (POCP) between the genomes of Ys
T
and related strains were less than 50%. Phenotypic analyses suggested that Ys
T
could not metabolize glucose and related sugars, which was discriminative from its phylogenetic relatives. We, therefore, propose a novel species in a new genus,
Chryseotalea sanaruensis
gen. nov., sp. nov. in the family
Cytophagaceae
(= JCM 30318
T
= LMG 30359
T
), based on cell size, the predominant cellular fatty acid composition, and the DNA GC content (38.9 mol%). |
doi_str_mv | 10.1007/s00284-019-01823-4 |
format | Article |
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T
was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. Ys
T
is aerobic, Gram-negative, and slender rod shaped. Ys
T
grew optimally at 30 °C, pH 7.0–8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone. The main cellular polar lipids were phosphatidylethanolamine and unidentified amino- and polar-lipids. The predominant cellular fatty acids were C
18:0
,
iso
-C
14:0
and
iso
-C
15:0
. Phylogenetic analysis of 16S rRNA gene sequence revealed the nearest neighbours of strain Ys
T
to be members of the
Ohtaekwangia
and
Chryseolinea
genera with 91.2–92.1% sequence similarity. The percentages of conserved proteins (POCP) between the genomes of Ys
T
and related strains were less than 50%. Phenotypic analyses suggested that Ys
T
could not metabolize glucose and related sugars, which was discriminative from its phylogenetic relatives. We, therefore, propose a novel species in a new genus,
Chryseotalea sanaruensis
gen. nov., sp. nov. in the family
Cytophagaceae
(= JCM 30318
T
= LMG 30359
T
), based on cell size, the predominant cellular fatty acid composition, and the DNA GC content (38.9 mol%).</description><identifier>ISSN: 0343-8651</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s00284-019-01823-4</identifier><identifier>PMID: 31792570</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Biomedical and Life Sciences ; Biotechnology ; Brackish water ; Cell size ; Conserved sequence ; Cytophagaceae ; Cytophagaceae - classification ; Cytophagaceae - isolation & purification ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; Fatty acid composition ; Fatty acids ; Fatty Acids - chemistry ; Filterability ; Genomes ; Japan ; Lakes ; Lakes - microbiology ; Life Sciences ; Lipids ; Microbiology ; New genera ; New species ; Phosphatidylethanolamine ; Phospholipids - chemistry ; Phylogenetics ; Phylogeny ; Quinones ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Saline Waters ; Sequence Analysis, DNA ; Sodium chloride ; Sugar ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry ; Water purification</subject><ispartof>Current microbiology, 2020-02, Vol.77 (2), p.306-312</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>Current Microbiology is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-c300cd5ca499f779f87c82c8e0e535c952d0a470aa0bb94377f49c3aaa6b43723</citedby><cites>FETCH-LOGICAL-c375t-c300cd5ca499f779f87c82c8e0e535c952d0a470aa0bb94377f49c3aaa6b43723</cites><orcidid>0000-0002-6505-9850</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00284-019-01823-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00284-019-01823-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31792570$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Maejima, Yoshiaki</creatorcontrib><creatorcontrib>Iino, Takao</creatorcontrib><creatorcontrib>Muraguchi, Yusuke</creatorcontrib><creatorcontrib>Fukuda, Kohei</creatorcontrib><creatorcontrib>Ohkuma, Moriya</creatorcontrib><creatorcontrib>Suzuki, Tomohiro</creatorcontrib><creatorcontrib>Moriuchi, Ryota</creatorcontrib><creatorcontrib>Dohra, Hideo</creatorcontrib><creatorcontrib>Kimbara, Kazuhide</creatorcontrib><creatorcontrib>Shintani, Masaki</creatorcontrib><title>Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><addtitle>Curr Microbiol</addtitle><description>A strain-designated Ys
T
was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. Ys
T
is aerobic, Gram-negative, and slender rod shaped. Ys
T
grew optimally at 30 °C, pH 7.0–8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone. The main cellular polar lipids were phosphatidylethanolamine and unidentified amino- and polar-lipids. The predominant cellular fatty acids were C
18:0
,
iso
-C
14:0
and
iso
-C
15:0
. Phylogenetic analysis of 16S rRNA gene sequence revealed the nearest neighbours of strain Ys
T
to be members of the
Ohtaekwangia
and
Chryseolinea
genera with 91.2–92.1% sequence similarity. The percentages of conserved proteins (POCP) between the genomes of Ys
T
and related strains were less than 50%. Phenotypic analyses suggested that Ys
T
could not metabolize glucose and related sugars, which was discriminative from its phylogenetic relatives. We, therefore, propose a novel species in a new genus,
Chryseotalea sanaruensis
gen. nov., sp. nov. in the family
Cytophagaceae
(= JCM 30318
T
= LMG 30359
T
), based on cell size, the predominant cellular fatty acid composition, and the DNA GC content (38.9 mol%).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Brackish water</subject><subject>Cell size</subject><subject>Conserved sequence</subject><subject>Cytophagaceae</subject><subject>Cytophagaceae - classification</subject><subject>Cytophagaceae - isolation & purification</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty acid composition</subject><subject>Fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>Filterability</subject><subject>Genomes</subject><subject>Japan</subject><subject>Lakes</subject><subject>Lakes - microbiology</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Microbiology</subject><subject>New genera</subject><subject>New species</subject><subject>Phosphatidylethanolamine</subject><subject>Phospholipids - chemistry</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Quinones</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Saline Waters</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium chloride</subject><subject>Sugar</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><subject>Water purification</subject><issn>0343-8651</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kc9u1DAQxi0EotuFF-CALHHh0CzjP6njI121tNUiLnCOJt7JbtokDnaCtA_Q966XFJB6QJZnxvJvvrH8MfZOwEoAmE8RQBY6A2HTLqTK9Au2EFrJDKwVL9kClFZZcZ6LE3Ya4x2AkBbEa3aihLEyN7BgD-t9OETyI7aEPGKPYaI-NpHvqF_x3v9anfE4pDCXyL9SV1HgvubjnvgVdk174OvD6Ic97tAR0hm_ib7Fkba8Dr5LPRcB3X0T93yD98Sbnl9jl9YYJ36LA_Zv2Ksa20hvn_KS_bi6_L6-zjbfvtysP28yp0w-pgjgtrlDbW1tjK0L4wrpCgLKVe5sLreA2gAiVJXVyphaW6cQ8bxKJ6mW7OOsOwT_c6I4ll0THbUt9uSnWEoloTC5TP-2ZB-eoXd-Cn16XaL0Ua3QJlFyplzwMQaqyyE0HYZDKaA8mlTOJpXJpPK3SeVR-v2T9FR1tP3b8seVBKgZiOmq31H4N_s_so8R3psd</recordid><startdate>20200201</startdate><enddate>20200201</enddate><creator>Maejima, Yoshiaki</creator><creator>Iino, Takao</creator><creator>Muraguchi, Yusuke</creator><creator>Fukuda, Kohei</creator><creator>Ohkuma, Moriya</creator><creator>Suzuki, Tomohiro</creator><creator>Moriuchi, Ryota</creator><creator>Dohra, Hideo</creator><creator>Kimbara, Kazuhide</creator><creator>Shintani, Masaki</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6505-9850</orcidid></search><sort><creationdate>20200201</creationdate><title>Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan</title><author>Maejima, Yoshiaki ; Iino, Takao ; Muraguchi, Yusuke ; Fukuda, Kohei ; Ohkuma, Moriya ; Suzuki, Tomohiro ; Moriuchi, Ryota ; Dohra, Hideo ; Kimbara, Kazuhide ; Shintani, Masaki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-c300cd5ca499f779f87c82c8e0e535c952d0a470aa0bb94377f49c3aaa6b43723</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Brackish water</topic><topic>Cell size</topic><topic>Conserved sequence</topic><topic>Cytophagaceae</topic><topic>Cytophagaceae - classification</topic><topic>Cytophagaceae - isolation & purification</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty acid composition</topic><topic>Fatty acids</topic><topic>Fatty Acids - chemistry</topic><topic>Filterability</topic><topic>Genomes</topic><topic>Japan</topic><topic>Lakes</topic><topic>Lakes - microbiology</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Microbiology</topic><topic>New genera</topic><topic>New species</topic><topic>Phosphatidylethanolamine</topic><topic>Phospholipids - chemistry</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Quinones</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Saline Waters</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium chloride</topic><topic>Sugar</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><topic>Water purification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Maejima, Yoshiaki</creatorcontrib><creatorcontrib>Iino, Takao</creatorcontrib><creatorcontrib>Muraguchi, Yusuke</creatorcontrib><creatorcontrib>Fukuda, Kohei</creatorcontrib><creatorcontrib>Ohkuma, Moriya</creatorcontrib><creatorcontrib>Suzuki, Tomohiro</creatorcontrib><creatorcontrib>Moriuchi, Ryota</creatorcontrib><creatorcontrib>Dohra, Hideo</creatorcontrib><creatorcontrib>Kimbara, Kazuhide</creatorcontrib><creatorcontrib>Shintani, Masaki</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Maejima, Yoshiaki</au><au>Iino, Takao</au><au>Muraguchi, Yusuke</au><au>Fukuda, Kohei</au><au>Ohkuma, Moriya</au><au>Suzuki, Tomohiro</au><au>Moriuchi, Ryota</au><au>Dohra, Hideo</au><au>Kimbara, Kazuhide</au><au>Shintani, Masaki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan</atitle><jtitle>Current microbiology</jtitle><stitle>Curr Microbiol</stitle><addtitle>Curr Microbiol</addtitle><date>2020-02-01</date><risdate>2020</risdate><volume>77</volume><issue>2</issue><spage>306</spage><epage>312</epage><pages>306-312</pages><issn>0343-8651</issn><eissn>1432-0991</eissn><abstract>A strain-designated Ys
T
was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. Ys
T
is aerobic, Gram-negative, and slender rod shaped. Ys
T
grew optimally at 30 °C, pH 7.0–8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone. The main cellular polar lipids were phosphatidylethanolamine and unidentified amino- and polar-lipids. The predominant cellular fatty acids were C
18:0
,
iso
-C
14:0
and
iso
-C
15:0
. Phylogenetic analysis of 16S rRNA gene sequence revealed the nearest neighbours of strain Ys
T
to be members of the
Ohtaekwangia
and
Chryseolinea
genera with 91.2–92.1% sequence similarity. The percentages of conserved proteins (POCP) between the genomes of Ys
T
and related strains were less than 50%. Phenotypic analyses suggested that Ys
T
could not metabolize glucose and related sugars, which was discriminative from its phylogenetic relatives. We, therefore, propose a novel species in a new genus,
Chryseotalea sanaruensis
gen. nov., sp. nov. in the family
Cytophagaceae
(= JCM 30318
T
= LMG 30359
T
), based on cell size, the predominant cellular fatty acid composition, and the DNA GC content (38.9 mol%).</abstract><cop>New York</cop><pub>Springer US</pub><pmid>31792570</pmid><doi>10.1007/s00284-019-01823-4</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-6505-9850</orcidid></addata></record> |
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source | MEDLINE; SpringerLink Journals - AutoHoldings |
subjects | Bacterial Typing Techniques Base Composition Biomedical and Life Sciences Biotechnology Brackish water Cell size Conserved sequence Cytophagaceae Cytophagaceae - classification Cytophagaceae - isolation & purification Deoxyribonucleic acid DNA DNA, Bacterial - genetics Fatty acid composition Fatty acids Fatty Acids - chemistry Filterability Genomes Japan Lakes Lakes - microbiology Life Sciences Lipids Microbiology New genera New species Phosphatidylethanolamine Phospholipids - chemistry Phylogenetics Phylogeny Quinones RNA, Ribosomal, 16S - genetics rRNA 16S Saline Waters Sequence Analysis, DNA Sodium chloride Sugar Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry Water purification |
title | Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan |
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