Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil
A Gram-stain negative, facultative aerobic bacterial strain, designated strain S-16 T , was isolated from soil in South Korea. Colonies were white-milkish and cells were non-motile rods with oxidase- and catalase-positive activities. The growth of strain S-16 T was observed at 20–40 °C (optimum, 25–...
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| Veröffentlicht in: | Current microbiology 2020-02, Vol.77 (2), p.286-293 |
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| creator | Khan, Shehzad Abid Jeong, Sang Eun Park, Hye Yoon Lee, Sang-Suk Jeon, Che Ok |
| description | A Gram-stain negative, facultative aerobic bacterial strain, designated strain S-16
T
, was isolated from soil in South Korea. Colonies were white-milkish and cells were non-motile rods with oxidase- and catalase-positive activities. The growth of strain S-16
T
was observed at 20–40 °C (optimum, 25–30 °C) and pH 5.5–7.0 (optimum, pH 6.5). Ubiquinone-8 was identified as the sole respiratory quinone and C
12:0
, C
16:0
, C
18:0
, C
15:1
ω
5
c
and summed feature 3 (comprising C
16:1
ω
7
c
and/or C
16:1
ω
6
c
) were identified as the major fatty acids (>5%). The major polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid. The G + C content of the genomic DNA calculated from the whole genome sequence was 66.8 mol%. Strain S-16
T
was most closely related to
Piscinibacter aquaticus
IMCC1728
T
,
Rhizobacter gummiphilus
NS21
T
and
Rhizobacter dauci
H6
T
with 16S rRNA gene sequence similarities of 97.93%, 97.93% and 97.44%, respectively. Phylogenetic analyses based on 16S rRNA gene and whole genome sequences suggested that strain S-16
T
could form a distinct phyletic lineage as a new genus within the family
Comamonadaceae
. Based on the phenotypic, chemotaxonomic and molecular features, strain S-16
T
represents the type strain of a novel species of a novel genus within the family
Comamonadaceae
, for which the name
Geomonas soli
gen. nov., sp. nov. is proposed. The type strain is S-16
T
(= KACC 19792
T
= JCM 32971
T
). |
| doi_str_mv | 10.1007/s00284-019-01814-5 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2317595316</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2317595316</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-30c05ccff2b79c8b3e8db423dd915d24bbf8902180ad85400ece7997fdbfbb823</originalsourceid><addsrcrecordid>eNp9kDtvFDEURi1ERJbAH6BAlmgoMpvrV8Yu0Yo8pJAUQG38uA4TzYwXexeUf483m4BEQWHZks_3XfsQ8obBkgH0JxWAa9kBM21pJjv1jCyYFLwDY9hzsgAhRadPFTskL2u9A2DcAHtBDgXrldRcLci3c8xTnl2lNY8DvcV5Sef8c3lM6_rp5Og1_qKfcPJYaE508x3pmZuG8Z6u8uR28egCOjyml63FbTDSVPJEP-dhfEUOkhsrvn7cj8jXs49fVhfd1c355erDVRdErzadgAAqhJS4703QXqCOXnIRo2Eqcul90gY40-CiVhIAA_bG9Cn65L3m4oi83_euS_6xxbqx01ADjqObMW-r5bs_GyXYaUPf_YPe5W2Z2-saJaXomVQ7iu-pUHKtBZNdl2Fy5d4ysDv_du_fNv_2wb9VLfT2sXrrJ4x_Ik_CGyD2QG1X8y2Wv7P_U_sbH2eOGw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2344371456</pqid></control><display><type>article</type><title>Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil</title><source>SpringerNature Journals</source><creator>Khan, Shehzad Abid ; Jeong, Sang Eun ; Park, Hye Yoon ; Lee, Sang-Suk ; Jeon, Che Ok</creator><creatorcontrib>Khan, Shehzad Abid ; Jeong, Sang Eun ; Park, Hye Yoon ; Lee, Sang-Suk ; Jeon, Che Ok</creatorcontrib><description>A Gram-stain negative, facultative aerobic bacterial strain, designated strain S-16
T
, was isolated from soil in South Korea. Colonies were white-milkish and cells were non-motile rods with oxidase- and catalase-positive activities. The growth of strain S-16
T
was observed at 20–40 °C (optimum, 25–30 °C) and pH 5.5–7.0 (optimum, pH 6.5). Ubiquinone-8 was identified as the sole respiratory quinone and C
12:0
, C
16:0
, C
18:0
, C
15:1
ω
5
c
and summed feature 3 (comprising C
16:1
ω
7
c
and/or C
16:1
ω
6
c
) were identified as the major fatty acids (>5%). The major polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid. The G + C content of the genomic DNA calculated from the whole genome sequence was 66.8 mol%. Strain S-16
T
was most closely related to
Piscinibacter aquaticus
IMCC1728
T
,
Rhizobacter gummiphilus
NS21
T
and
Rhizobacter dauci
H6
T
with 16S rRNA gene sequence similarities of 97.93%, 97.93% and 97.44%, respectively. Phylogenetic analyses based on 16S rRNA gene and whole genome sequences suggested that strain S-16
T
could form a distinct phyletic lineage as a new genus within the family
Comamonadaceae
. Based on the phenotypic, chemotaxonomic and molecular features, strain S-16
T
represents the type strain of a novel species of a novel genus within the family
Comamonadaceae
, for which the name
Geomonas soli
gen. nov., sp. nov. is proposed. The type strain is S-16
T
(= KACC 19792
T
= JCM 32971
T
).</description><identifier>ISSN: 0343-8651</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s00284-019-01814-5</identifier><identifier>PMID: 31754825</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Catalase ; Coenzyme Q8 ; Deoxyribonucleic acid ; DNA ; Fatty acids ; Gene sequencing ; Genomes ; Life Sciences ; Lipids ; Microbiology ; New genera ; New species ; Nucleotide sequence ; pH effects ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phospholipids ; Phylogeny ; Quinones ; rRNA 16S ; Soils ; Ubiquinone</subject><ispartof>Current microbiology, 2020-02, Vol.77 (2), p.286-293</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>Current Microbiology is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-30c05ccff2b79c8b3e8db423dd915d24bbf8902180ad85400ece7997fdbfbb823</citedby><cites>FETCH-LOGICAL-c375t-30c05ccff2b79c8b3e8db423dd915d24bbf8902180ad85400ece7997fdbfbb823</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00284-019-01814-5$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00284-019-01814-5$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31754825$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Khan, Shehzad Abid</creatorcontrib><creatorcontrib>Jeong, Sang Eun</creatorcontrib><creatorcontrib>Park, Hye Yoon</creatorcontrib><creatorcontrib>Lee, Sang-Suk</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><title>Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><addtitle>Curr Microbiol</addtitle><description>A Gram-stain negative, facultative aerobic bacterial strain, designated strain S-16
T
, was isolated from soil in South Korea. Colonies were white-milkish and cells were non-motile rods with oxidase- and catalase-positive activities. The growth of strain S-16
T
was observed at 20–40 °C (optimum, 25–30 °C) and pH 5.5–7.0 (optimum, pH 6.5). Ubiquinone-8 was identified as the sole respiratory quinone and C
12:0
, C
16:0
, C
18:0
, C
15:1
ω
5
c
and summed feature 3 (comprising C
16:1
ω
7
c
and/or C
16:1
ω
6
c
) were identified as the major fatty acids (>5%). The major polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid. The G + C content of the genomic DNA calculated from the whole genome sequence was 66.8 mol%. Strain S-16
T
was most closely related to
Piscinibacter aquaticus
IMCC1728
T
,
Rhizobacter gummiphilus
NS21
T
and
Rhizobacter dauci
H6
T
with 16S rRNA gene sequence similarities of 97.93%, 97.93% and 97.44%, respectively. Phylogenetic analyses based on 16S rRNA gene and whole genome sequences suggested that strain S-16
T
could form a distinct phyletic lineage as a new genus within the family
Comamonadaceae
. Based on the phenotypic, chemotaxonomic and molecular features, strain S-16
T
represents the type strain of a novel species of a novel genus within the family
Comamonadaceae
, for which the name
Geomonas soli
gen. nov., sp. nov. is proposed. The type strain is S-16
T
(= KACC 19792
T
= JCM 32971
T
).</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Catalase</subject><subject>Coenzyme Q8</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fatty acids</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Microbiology</subject><subject>New genera</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>pH effects</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phospholipids</subject><subject>Phylogeny</subject><subject>Quinones</subject><subject>rRNA 16S</subject><subject>Soils</subject><subject>Ubiquinone</subject><issn>0343-8651</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kDtvFDEURi1ERJbAH6BAlmgoMpvrV8Yu0Yo8pJAUQG38uA4TzYwXexeUf483m4BEQWHZks_3XfsQ8obBkgH0JxWAa9kBM21pJjv1jCyYFLwDY9hzsgAhRadPFTskL2u9A2DcAHtBDgXrldRcLci3c8xTnl2lNY8DvcV5Sef8c3lM6_rp5Og1_qKfcPJYaE508x3pmZuG8Z6u8uR28egCOjyml63FbTDSVPJEP-dhfEUOkhsrvn7cj8jXs49fVhfd1c355erDVRdErzadgAAqhJS4703QXqCOXnIRo2Eqcul90gY40-CiVhIAA_bG9Cn65L3m4oi83_euS_6xxbqx01ADjqObMW-r5bs_GyXYaUPf_YPe5W2Z2-saJaXomVQ7iu-pUHKtBZNdl2Fy5d4ysDv_du_fNv_2wb9VLfT2sXrrJ4x_Ik_CGyD2QG1X8y2Wv7P_U_sbH2eOGw</recordid><startdate>20200201</startdate><enddate>20200201</enddate><creator>Khan, Shehzad Abid</creator><creator>Jeong, Sang Eun</creator><creator>Park, Hye Yoon</creator><creator>Lee, Sang-Suk</creator><creator>Jeon, Che Ok</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20200201</creationdate><title>Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil</title><author>Khan, Shehzad Abid ; Jeong, Sang Eun ; Park, Hye Yoon ; Lee, Sang-Suk ; Jeon, Che Ok</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-30c05ccff2b79c8b3e8db423dd915d24bbf8902180ad85400ece7997fdbfbb823</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Catalase</topic><topic>Coenzyme Q8</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Fatty acids</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Microbiology</topic><topic>New genera</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>pH effects</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phospholipids</topic><topic>Phylogeny</topic><topic>Quinones</topic><topic>rRNA 16S</topic><topic>Soils</topic><topic>Ubiquinone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Khan, Shehzad Abid</creatorcontrib><creatorcontrib>Jeong, Sang Eun</creatorcontrib><creatorcontrib>Park, Hye Yoon</creatorcontrib><creatorcontrib>Lee, Sang-Suk</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Khan, Shehzad Abid</au><au>Jeong, Sang Eun</au><au>Park, Hye Yoon</au><au>Lee, Sang-Suk</au><au>Jeon, Che Ok</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil</atitle><jtitle>Current microbiology</jtitle><stitle>Curr Microbiol</stitle><addtitle>Curr Microbiol</addtitle><date>2020-02-01</date><risdate>2020</risdate><volume>77</volume><issue>2</issue><spage>286</spage><epage>293</epage><pages>286-293</pages><issn>0343-8651</issn><eissn>1432-0991</eissn><abstract>A Gram-stain negative, facultative aerobic bacterial strain, designated strain S-16
T
, was isolated from soil in South Korea. Colonies were white-milkish and cells were non-motile rods with oxidase- and catalase-positive activities. The growth of strain S-16
T
was observed at 20–40 °C (optimum, 25–30 °C) and pH 5.5–7.0 (optimum, pH 6.5). Ubiquinone-8 was identified as the sole respiratory quinone and C
12:0
, C
16:0
, C
18:0
, C
15:1
ω
5
c
and summed feature 3 (comprising C
16:1
ω
7
c
and/or C
16:1
ω
6
c
) were identified as the major fatty acids (>5%). The major polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and an unidentified polar lipid. The G + C content of the genomic DNA calculated from the whole genome sequence was 66.8 mol%. Strain S-16
T
was most closely related to
Piscinibacter aquaticus
IMCC1728
T
,
Rhizobacter gummiphilus
NS21
T
and
Rhizobacter dauci
H6
T
with 16S rRNA gene sequence similarities of 97.93%, 97.93% and 97.44%, respectively. Phylogenetic analyses based on 16S rRNA gene and whole genome sequences suggested that strain S-16
T
could form a distinct phyletic lineage as a new genus within the family
Comamonadaceae
. Based on the phenotypic, chemotaxonomic and molecular features, strain S-16
T
represents the type strain of a novel species of a novel genus within the family
Comamonadaceae
, for which the name
Geomonas soli
gen. nov., sp. nov. is proposed. The type strain is S-16
T
(= KACC 19792
T
= JCM 32971
T
).</abstract><cop>New York</cop><pub>Springer US</pub><pmid>31754825</pmid><doi>10.1007/s00284-019-01814-5</doi><tpages>8</tpages></addata></record> |
| fulltext | fulltext |
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| ispartof | Current microbiology, 2020-02, Vol.77 (2), p.286-293 |
| issn | 0343-8651 1432-0991 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2317595316 |
| source | SpringerNature Journals |
| subjects | Biomedical and Life Sciences Biotechnology Catalase Coenzyme Q8 Deoxyribonucleic acid DNA Fatty acids Gene sequencing Genomes Life Sciences Lipids Microbiology New genera New species Nucleotide sequence pH effects Phosphatidylethanolamine Phosphatidylglycerol Phospholipids Phylogeny Quinones rRNA 16S Soils Ubiquinone |
| title | Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil |
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