Emendation of the Genus Auritidibacter Yassin et al. 2011 and Auritidibacter ignavus Yassin et al. 2011 based on features observed from Canadian and Swiss clinical isolates and whole-genome sequencing analysis
is a Gram-stain-positive bacillus derived from otorrhea. Four strains derived from ear discharges in Canada and Switzerland, with features consistent with but distinguishable from IMMIB L-1656 (accession number FN554542) by 16S rRNA gene sequencing (97.5 % similarity), were thought to represent a no...
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Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2020-01, Vol.70 (1), p.83-88 |
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Sprache: | eng |
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Zusammenfassung: | is a Gram-stain-positive bacillus derived from otorrhea. Four strains derived from ear discharges in Canada and Switzerland, with features consistent with but distinguishable from
IMMIB L-1656
(accession number FN554542) by 16S rRNA gene sequencing (97.5 % similarity), were thought to represent a novel species of the genus
.
DSM 45359
(=IMMIB L-1656
) was acquired to compare with Canadian and Swiss strains by whole-genome sequencing (WGS). Unexpectedly, those isolates were observed to be consistent with
DSM 45359
by WGS (ANIb scores >98 %), MALDI-TOF (Bruker), cellular fatty acid analysis and biochemically (some differences were observed). A nearly full 16S rRNA gene sequence could not be readily prepared from
DSM 45359
, even after multiple attempts. A 16S rRNA gene chimeric consensus sequence created from the genome assembly of
DSM 45359
had only 97.5 % similarity to that of
IMMIB L-1656
, implying that 16S rRNA sequence accession number FN554542 could not be replicated. We concluded that our isolates of members of the genus
were consistent with
DSM 45359
, did not represent a novel species, and that the sequence corresponding to FN554542 was not reproducible. By WGS,
DSM 45359
had genome of 2.53×10
bp with a DNA G+C content of 59.34%, while genomes of Canadian and Swiss isolates ranged from 2.47 to 2.59×10
bp with DNA G+C contents of 59.3-59.52 %.
NML 100628 (=NCTC 14178=LMG 30897) did not demonstrate a rodcoccus cycle. Emendation of
was proposed based on these results. |
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ISSN: | 1466-5026 1466-5034 |
DOI: | 10.1099/ijsem.0.003719 |