Influence of genotype, agro-climatic conditions, cooking method, and their interactions on individual carotenoids and hydroxycinnamic acids contents in tubers of diploid potatoes

[Display omitted] •Single factors and their interactions affects the content of carotenoids and phenolic compounds.•Differential extractability/stability of bioactive compounds depending on genotype and agro-climatic conditions.•Solanum tuberosum group Phureja provides carotenoids and phenolic compounds.•ASCA revealed there was no single factor favoring the accumulation of the bioactive compounds. The effects of genotype, agro-climatic conditions (ACC), and cooking method as well as their interactions on the content of individual carotenoids and hydroxycinnamic acids in different potato tubers were evaluated. While zeaxanthin content was highly influenced by the ACC (up to 631-fold change), chlorogenic acid was similarly influenced by the cooking method (up to 3.1-fold increase after cooking), by the interactions ACC × cooking method (up to 2.1-fold increase) and genotype × cooking method (up to 1.7-fold increase). Stability/extractability of compounds after cooking was found to be genotype and ACC dependent, which suggest that genotype and ACC induces differential expression of genes for the biosynthesis pathways of carotenoids and hydroxycinnamic acids is different among, as well as components of the cellular matrix. These results are promising to apply in potato breeding programs with the perspective to develop new potato cultivars selected by their nutritional attributes.