Aug-MIA-QSAR based strategy in bioactivity prediction of a series of flavonoid derivatives as HIV-1 inhibitors

•Construction of MIA-QSAR and aug-MIA-QSAR models using a dataset of flavonoid derivatives active against HIV-1.•Comparing the two scenarios and identifying the most suitable model using statistical variables such as R2 and R2test.•Aug-MIA-QSAR based image processing is a unique two-dimensional tech...

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Veröffentlicht in:Journal of theoretical biology 2019-05, Vol.469, p.18-24
Hauptverfasser: Muthukumaran, Panchaksaram, Rajiniraja, Muniyan
Format: Artikel
Sprache:eng
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Zusammenfassung:•Construction of MIA-QSAR and aug-MIA-QSAR models using a dataset of flavonoid derivatives active against HIV-1.•Comparing the two scenarios and identifying the most suitable model using statistical variables such as R2 and R2test.•Aug-MIA-QSAR based image processing is a unique two-dimensional technique contributing major part to drug research. Multivariate image analysis-quantitative structure-activity relationship (MIA-QSAR) is a simple and quite accessible QSAR method for predicting biological activities of compounds based on two-dimensional image analysis. Aug-MIA-QSAR is a modified version of multivariate image analysis, where the atoms in 2D chemical structures were augmented (labelled by assigning specific colours). This study focuses on efficiently constructing such prediction models using a dataset of flavonoid derivatives possessing human immunodeficiency virus – 1 inhibition. The models were constructed by partial least square regression using non-linear iterative partial least square (NIPALS) algorithm and linearized by identifying an optimum number of seven latent variables. A leave-one-out cross validation (LOOCV) helped to verify the actual and predicted data. The two multivariate methods were compared and analysed to identify the most suitable method.
ISSN:0022-5193
1095-8541
DOI:10.1016/j.jtbi.2019.02.019