Algoriphagus olei sp. nov., isolated from oil-contaminated soil
1 College of Agriculture and Natural Resources, Department of Soil and Environmental Sciences, National Chung Hsing University, Taichung 402, Taiwan, ROC 2 Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City...
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creator | Young, Chiu-Chung Lin, Shi-Yao Arun, A. B Shen, Fo-Ting Chen, Wen-Ming Rekha, P. D Langer, Stefan Busse, Hans-Jurgen Wu, Yun-Hsuan Kampfer, Peter |
description | 1 College of Agriculture and Natural Resources, Department of Soil and Environmental Sciences, National Chung Hsing University, Taichung 402, Taiwan, ROC
2 Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan, ROC
3 Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität Wien, Vienna, Austria
4 Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
5 Yenepoya Research Center, Yenepoya University, University Road, Deralakatte, Mangalore, 575018, Karnataka, India
Correspondence Peter Kämpfer peter.kaempfer{at}umwelt.uni-giessen.de
A motile, Gram-negative, pinkish red-pigmented bacterium (strain CC-Hsuan-617 T ) was isolated from an oil-contaminated soil near an oil refinery located in Kaohsiung County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Hsuan-617 T clustered with Algoriphagus mannitolivorans (97.5 % sequence similarity), Algoriphagus aquatilis (98.0 %) and Algoriphagus boritolerans (97.5 %), followed by Algoriphagus ornithinivorans (97.1 %) and Algoriphagus alkaliphilus (97.1 %). The fatty acid profile of the novel strain was slightly different from those reported for recognized Algoriphagus species. The quinone system contained menaquinone MK-7 as the predominant component. The major polar lipids were phosphatidylethanolamine, an unknown polar lipid, an unknown phospholipid and an unknown aminophospholipid. The main cell polyamine was sym -homospermidine; lesser amounts of spermine and spermidine were also found. The results of DNA–DNA hybridization, and physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain CC-Hsuan-617 T from recognized Algoriphagus species. Strain CC-Hsuan-617 T is thus considered to represent a novel species of the genus Algoriphagus , for which the name Algoriphagus olei sp. nov. is proposed. The type strain is CC-Hsuan-617 T (=BCRC 17886 T =CCUG 57471 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CC-Hsuan-617 T is FJ231215 . |
doi_str_mv | 10.1099/ijs.0.009415-0 |
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2 Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan, ROC
3 Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität Wien, Vienna, Austria
4 Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
5 Yenepoya Research Center, Yenepoya University, University Road, Deralakatte, Mangalore, 575018, Karnataka, India
Correspondence Peter Kämpfer peter.kaempfer{at}umwelt.uni-giessen.de
A motile, Gram-negative, pinkish red-pigmented bacterium (strain CC-Hsuan-617 T ) was isolated from an oil-contaminated soil near an oil refinery located in Kaohsiung County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Hsuan-617 T clustered with Algoriphagus mannitolivorans (97.5 % sequence similarity), Algoriphagus aquatilis (98.0 %) and Algoriphagus boritolerans (97.5 %), followed by Algoriphagus ornithinivorans (97.1 %) and Algoriphagus alkaliphilus (97.1 %). The fatty acid profile of the novel strain was slightly different from those reported for recognized Algoriphagus species. The quinone system contained menaquinone MK-7 as the predominant component. The major polar lipids were phosphatidylethanolamine, an unknown polar lipid, an unknown phospholipid and an unknown aminophospholipid. The main cell polyamine was sym -homospermidine; lesser amounts of spermine and spermidine were also found. The results of DNA–DNA hybridization, and physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain CC-Hsuan-617 T from recognized Algoriphagus species. Strain CC-Hsuan-617 T is thus considered to represent a novel species of the genus Algoriphagus , for which the name Algoriphagus olei sp. nov. is proposed. The type strain is CC-Hsuan-617 T (=BCRC 17886 T =CCUG 57471 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CC-Hsuan-617 T is FJ231215 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.009415-0</identifier><identifier>PMID: 19628616</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacteriology ; Bacteroidetes - classification ; Bacteroidetes - genetics ; Bacteroidetes - isolation & purification ; Biological and medical sciences ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Environmental Pollution ; Fundamental and applied biological sciences. Psychology ; Microbiology ; Molecular Sequence Data ; Oils - analysis ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Soil - analysis ; Soil Microbiology ; Soil Pollutants - analysis ; Systematics ; Taiwan</subject><ispartof>International journal of systematic and evolutionary microbiology, 2009-11, Vol.59 (11), p.2909-2915</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-75731f61f386a703b2c838b449d7574614df2dc58d5286dcdfbd600e7b379c613</citedby><cites>FETCH-LOGICAL-c429t-75731f61f386a703b2c838b449d7574614df2dc58d5286dcdfbd600e7b379c613</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22149824$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19628616$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Young, Chiu-Chung</creatorcontrib><creatorcontrib>Lin, Shi-Yao</creatorcontrib><creatorcontrib>Arun, A. B</creatorcontrib><creatorcontrib>Shen, Fo-Ting</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><creatorcontrib>Rekha, P. D</creatorcontrib><creatorcontrib>Langer, Stefan</creatorcontrib><creatorcontrib>Busse, Hans-Jurgen</creatorcontrib><creatorcontrib>Wu, Yun-Hsuan</creatorcontrib><creatorcontrib>Kampfer, Peter</creatorcontrib><title>Algoriphagus olei sp. nov., isolated from oil-contaminated soil</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 College of Agriculture and Natural Resources, Department of Soil and Environmental Sciences, National Chung Hsing University, Taichung 402, Taiwan, ROC
2 Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan, ROC
3 Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität Wien, Vienna, Austria
4 Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
5 Yenepoya Research Center, Yenepoya University, University Road, Deralakatte, Mangalore, 575018, Karnataka, India
Correspondence Peter Kämpfer peter.kaempfer{at}umwelt.uni-giessen.de
A motile, Gram-negative, pinkish red-pigmented bacterium (strain CC-Hsuan-617 T ) was isolated from an oil-contaminated soil near an oil refinery located in Kaohsiung County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Hsuan-617 T clustered with Algoriphagus mannitolivorans (97.5 % sequence similarity), Algoriphagus aquatilis (98.0 %) and Algoriphagus boritolerans (97.5 %), followed by Algoriphagus ornithinivorans (97.1 %) and Algoriphagus alkaliphilus (97.1 %). The fatty acid profile of the novel strain was slightly different from those reported for recognized Algoriphagus species. The quinone system contained menaquinone MK-7 as the predominant component. The major polar lipids were phosphatidylethanolamine, an unknown polar lipid, an unknown phospholipid and an unknown aminophospholipid. The main cell polyamine was sym -homospermidine; lesser amounts of spermine and spermidine were also found. The results of DNA–DNA hybridization, and physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain CC-Hsuan-617 T from recognized Algoriphagus species. Strain CC-Hsuan-617 T is thus considered to represent a novel species of the genus Algoriphagus , for which the name Algoriphagus olei sp. nov. is proposed. The type strain is CC-Hsuan-617 T (=BCRC 17886 T =CCUG 57471 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CC-Hsuan-617 T is FJ231215 .</description><subject>Bacteriology</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - genetics</subject><subject>Bacteroidetes - isolation & purification</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Environmental Pollution</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Oils - analysis</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Soil - analysis</subject><subject>Soil Microbiology</subject><subject>Soil Pollutants - analysis</subject><subject>Systematics</subject><subject>Taiwan</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkM1LxDAQxYMo7rp69Si9KAi2JmmaNidZFr9gwYueQ5qk3SxtU5NW8b83a5f1NMOb38w8HgCXCCYIMnZvtj6BCYSMoCyGR2COCKVxBlNyfOgxnYEz77cQBgHCUzBDjOKCIjoHD8umts70G1GPPrKNNpHvk6izX8ldZLxtxKBVVDnbRtY0sbTdIFrT_ak-KOfgpBKN1xf7ugAfT4_vq5d4_fb8ulquY0kwG-I8y1NUUVSlBRU5TEssi7QoCWEqjAhFRFVYyaxQWTCmpKpKFazqvExzJilKF-Bmuts7-zlqP_DWeKmbRnTajp5jhHOM8x2YTKB01nunK9470wr3wxHku8h4iIxDPkXGYVi42l8ey1arf3yfUQCu94DwUjSVE500_sBhjAgrMAnc7cRtTL35Nk7zWnetCT5KY3dfM8YR4phBlv4C0daBMw</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Young, Chiu-Chung</creator><creator>Lin, Shi-Yao</creator><creator>Arun, A. B</creator><creator>Shen, Fo-Ting</creator><creator>Chen, Wen-Ming</creator><creator>Rekha, P. D</creator><creator>Langer, Stefan</creator><creator>Busse, Hans-Jurgen</creator><creator>Wu, Yun-Hsuan</creator><creator>Kampfer, Peter</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7TV</scope><scope>C1K</scope></search><sort><creationdate>20091101</creationdate><title>Algoriphagus olei sp. nov., isolated from oil-contaminated soil</title><author>Young, Chiu-Chung ; Lin, Shi-Yao ; Arun, A. B ; Shen, Fo-Ting ; Chen, Wen-Ming ; Rekha, P. D ; Langer, Stefan ; Busse, Hans-Jurgen ; Wu, Yun-Hsuan ; Kampfer, Peter</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-75731f61f386a703b2c838b449d7574614df2dc58d5286dcdfbd600e7b379c613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Bacteriology</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - genetics</topic><topic>Bacteroidetes - isolation & purification</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Environmental Pollution</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Oils - analysis</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Soil - analysis</topic><topic>Soil Microbiology</topic><topic>Soil Pollutants - analysis</topic><topic>Systematics</topic><topic>Taiwan</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Young, Chiu-Chung</creatorcontrib><creatorcontrib>Lin, Shi-Yao</creatorcontrib><creatorcontrib>Arun, A. B</creatorcontrib><creatorcontrib>Shen, Fo-Ting</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><creatorcontrib>Rekha, P. D</creatorcontrib><creatorcontrib>Langer, Stefan</creatorcontrib><creatorcontrib>Busse, Hans-Jurgen</creatorcontrib><creatorcontrib>Wu, Yun-Hsuan</creatorcontrib><creatorcontrib>Kampfer, Peter</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Pollution Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Young, Chiu-Chung</au><au>Lin, Shi-Yao</au><au>Arun, A. B</au><au>Shen, Fo-Ting</au><au>Chen, Wen-Ming</au><au>Rekha, P. D</au><au>Langer, Stefan</au><au>Busse, Hans-Jurgen</au><au>Wu, Yun-Hsuan</au><au>Kampfer, Peter</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Algoriphagus olei sp. nov., isolated from oil-contaminated soil</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>59</volume><issue>11</issue><spage>2909</spage><epage>2915</epage><pages>2909-2915</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 College of Agriculture and Natural Resources, Department of Soil and Environmental Sciences, National Chung Hsing University, Taichung 402, Taiwan, ROC
2 Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan, ROC
3 Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität Wien, Vienna, Austria
4 Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
5 Yenepoya Research Center, Yenepoya University, University Road, Deralakatte, Mangalore, 575018, Karnataka, India
Correspondence Peter Kämpfer peter.kaempfer{at}umwelt.uni-giessen.de
A motile, Gram-negative, pinkish red-pigmented bacterium (strain CC-Hsuan-617 T ) was isolated from an oil-contaminated soil near an oil refinery located in Kaohsiung County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Hsuan-617 T clustered with Algoriphagus mannitolivorans (97.5 % sequence similarity), Algoriphagus aquatilis (98.0 %) and Algoriphagus boritolerans (97.5 %), followed by Algoriphagus ornithinivorans (97.1 %) and Algoriphagus alkaliphilus (97.1 %). The fatty acid profile of the novel strain was slightly different from those reported for recognized Algoriphagus species. The quinone system contained menaquinone MK-7 as the predominant component. The major polar lipids were phosphatidylethanolamine, an unknown polar lipid, an unknown phospholipid and an unknown aminophospholipid. The main cell polyamine was sym -homospermidine; lesser amounts of spermine and spermidine were also found. The results of DNA–DNA hybridization, and physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain CC-Hsuan-617 T from recognized Algoriphagus species. Strain CC-Hsuan-617 T is thus considered to represent a novel species of the genus Algoriphagus , for which the name Algoriphagus olei sp. nov. is proposed. The type strain is CC-Hsuan-617 T (=BCRC 17886 T =CCUG 57471 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CC-Hsuan-617 T is FJ231215 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>19628616</pmid><doi>10.1099/ijs.0.009415-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacteriology Bacteroidetes - classification Bacteroidetes - genetics Bacteroidetes - isolation & purification Biological and medical sciences DNA, Bacterial - genetics DNA, Ribosomal - genetics Environmental Pollution Fundamental and applied biological sciences. Psychology Microbiology Molecular Sequence Data Oils - analysis Phylogeny RNA, Ribosomal, 16S - genetics Soil - analysis Soil Microbiology Soil Pollutants - analysis Systematics Taiwan |
title | Algoriphagus olei sp. nov., isolated from oil-contaminated soil |
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