Deinococcus terrigena sp. nov., a novel member of the family Deinococcaceae

A bacterial strain, S13-1-2-1 T , was isolated from a soil sample collected in Gyeongsangnam-do province, South Korea. Cells were observed to be Gram-stain negative, short rod-shaped and colonies to be pale pink in colour. Analysis of 16S rRNA gene sequences identified this strain as a member of the...

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Veröffentlicht in:Antonie van Leeuwenhoek 2019-03, Vol.112 (3), p.389-399
Hauptverfasser: Ten, Leonid N., Cho, Huiyun, Cho, Young-Je, Jung, Hee-Young
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Cho, Young-Je
Jung, Hee-Young
description A bacterial strain, S13-1-2-1 T , was isolated from a soil sample collected in Gyeongsangnam-do province, South Korea. Cells were observed to be Gram-stain negative, short rod-shaped and colonies to be pale pink in colour. Analysis of 16S rRNA gene sequences identified this strain as a member of the genus Deinococcus in the family Deinococcaceae , with high levels of sequence similarity with Deinococcus ficus CC-FR2-10 T (97.9%) and Deinococcus enclensis NIO-1023 T (95.4%). Growth of strain S13-1-2-1 T was observed at 10–42 °C, pH 6–8, and in the presence of 0–1.0% NaCl. The isolate was found to exhibit resistance to gamma radiation (D 10 10.1 KGy) and UV-light (D 10 612 J/m 2 ). The major peptidoglycan amino acids were identified as d -glutamic acid, glycine, alanine and l -ornithine. The predominant respiratory quinone of the strain was identified as menaquinone-8, the major fatty acids were found to be C 16:1 ω 7c (31.4%), C 16:0 (18.4%), and C 17:1 ω 8c (17.4%) and the major polar lipids were observed to be an unidentified phosphoglycolipid and an unidentified glycolipid. The genomic DNA G + C content of the strain was determined to be 69.2 mol%. DNA–DNA hybridization with D . ficus showed a relatedness value of 31.5 ± 4.2%. The DNA–DNA hybridization result and the differentiating phenotypic properties clearly indicate that strain S13-1-2-1 T represents a novel species in the genus Deinococcus , for which the name Deinococcus terrigena sp. nov. is proposed. The type strain is S13-1-2-1 T (= KCTC 33939 T  = JCM 32248 T ).
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Cells were observed to be Gram-stain negative, short rod-shaped and colonies to be pale pink in colour. Analysis of 16S rRNA gene sequences identified this strain as a member of the genus Deinococcus in the family Deinococcaceae , with high levels of sequence similarity with Deinococcus ficus CC-FR2-10 T (97.9%) and Deinococcus enclensis NIO-1023 T (95.4%). Growth of strain S13-1-2-1 T was observed at 10–42 °C, pH 6–8, and in the presence of 0–1.0% NaCl. The isolate was found to exhibit resistance to gamma radiation (D 10 10.1 KGy) and UV-light (D 10 612 J/m 2 ). The major peptidoglycan amino acids were identified as d -glutamic acid, glycine, alanine and l -ornithine. The predominant respiratory quinone of the strain was identified as menaquinone-8, the major fatty acids were found to be C 16:1 ω 7c (31.4%), C 16:0 (18.4%), and C 17:1 ω 8c (17.4%) and the major polar lipids were observed to be an unidentified phosphoglycolipid and an unidentified glycolipid. The genomic DNA G + C content of the strain was determined to be 69.2 mol%. DNA–DNA hybridization with D . ficus showed a relatedness value of 31.5 ± 4.2%. The DNA–DNA hybridization result and the differentiating phenotypic properties clearly indicate that strain S13-1-2-1 T represents a novel species in the genus Deinococcus , for which the name Deinococcus terrigena sp. nov. is proposed. The type strain is S13-1-2-1 T (= KCTC 33939 T  = JCM 32248 T ).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-018-1167-9</identifier><identifier>PMID: 30238338</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Alanine ; Amino acids ; Base Composition ; Biomedical and Life Sciences ; Cell Wall - chemistry ; Cytosol - chemistry ; Deinococcus ; Deinococcus - classification ; Deinococcus - genetics ; Deinococcus - isolation &amp; purification ; Deinococcus - physiology ; Deoxyribonucleic acid ; DNA ; Fatty acids ; Fatty Acids - analysis ; Gamma Rays ; Gene sequencing ; Glutamic acid ; Glycine ; Glycolipids - analysis ; Hybridization ; Hydrogen-Ion Concentration ; Korea ; Life Sciences ; Lipids ; Medical Microbiology ; Menaquinones ; Microbiology ; New species ; Nucleic Acid Hybridization ; Original Paper ; Ornithine ; Peptidoglycan - analysis ; Peptidoglycans ; Phospholipids - analysis ; Phylogeny ; Plant Sciences ; Quinones ; Quinones - analysis ; Radiation tolerance ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Sequence Homology, Nucleic Acid ; Sodium chloride ; Sodium Chloride - metabolism ; Soil Microbiology ; Soil Science &amp; Conservation ; Temperature ; Ultraviolet radiation ; Vitamin K 2 - analysis ; γ Radiation</subject><ispartof>Antonie van Leeuwenhoek, 2019-03, Vol.112 (3), p.389-399</ispartof><rights>Springer Nature Switzerland AG 2018</rights><rights>Antonie van Leeuwenhoek is a copyright of Springer, (2018). 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Cells were observed to be Gram-stain negative, short rod-shaped and colonies to be pale pink in colour. Analysis of 16S rRNA gene sequences identified this strain as a member of the genus Deinococcus in the family Deinococcaceae , with high levels of sequence similarity with Deinococcus ficus CC-FR2-10 T (97.9%) and Deinococcus enclensis NIO-1023 T (95.4%). Growth of strain S13-1-2-1 T was observed at 10–42 °C, pH 6–8, and in the presence of 0–1.0% NaCl. The isolate was found to exhibit resistance to gamma radiation (D 10 10.1 KGy) and UV-light (D 10 612 J/m 2 ). The major peptidoglycan amino acids were identified as d -glutamic acid, glycine, alanine and l -ornithine. The predominant respiratory quinone of the strain was identified as menaquinone-8, the major fatty acids were found to be C 16:1 ω 7c (31.4%), C 16:0 (18.4%), and C 17:1 ω 8c (17.4%) and the major polar lipids were observed to be an unidentified phosphoglycolipid and an unidentified glycolipid. The genomic DNA G + C content of the strain was determined to be 69.2 mol%. DNA–DNA hybridization with D . ficus showed a relatedness value of 31.5 ± 4.2%. The DNA–DNA hybridization result and the differentiating phenotypic properties clearly indicate that strain S13-1-2-1 T represents a novel species in the genus Deinococcus , for which the name Deinococcus terrigena sp. nov. is proposed. The type strain is S13-1-2-1 T (= KCTC 33939 T  = JCM 32248 T ).</description><subject>Alanine</subject><subject>Amino acids</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Wall - chemistry</subject><subject>Cytosol - chemistry</subject><subject>Deinococcus</subject><subject>Deinococcus - classification</subject><subject>Deinococcus - genetics</subject><subject>Deinococcus - isolation &amp; purification</subject><subject>Deinococcus - physiology</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>Gamma Rays</subject><subject>Gene sequencing</subject><subject>Glutamic acid</subject><subject>Glycine</subject><subject>Glycolipids - analysis</subject><subject>Hybridization</subject><subject>Hydrogen-Ion Concentration</subject><subject>Korea</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Medical Microbiology</subject><subject>Menaquinones</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleic Acid Hybridization</subject><subject>Original Paper</subject><subject>Ornithine</subject><subject>Peptidoglycan - analysis</subject><subject>Peptidoglycans</subject><subject>Phospholipids - analysis</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Quinones</subject><subject>Quinones - analysis</subject><subject>Radiation tolerance</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Sodium chloride</subject><subject>Sodium Chloride - metabolism</subject><subject>Soil Microbiology</subject><subject>Soil Science &amp; 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Cells were observed to be Gram-stain negative, short rod-shaped and colonies to be pale pink in colour. Analysis of 16S rRNA gene sequences identified this strain as a member of the genus Deinococcus in the family Deinococcaceae , with high levels of sequence similarity with Deinococcus ficus CC-FR2-10 T (97.9%) and Deinococcus enclensis NIO-1023 T (95.4%). Growth of strain S13-1-2-1 T was observed at 10–42 °C, pH 6–8, and in the presence of 0–1.0% NaCl. The isolate was found to exhibit resistance to gamma radiation (D 10 10.1 KGy) and UV-light (D 10 612 J/m 2 ). The major peptidoglycan amino acids were identified as d -glutamic acid, glycine, alanine and l -ornithine. The predominant respiratory quinone of the strain was identified as menaquinone-8, the major fatty acids were found to be C 16:1 ω 7c (31.4%), C 16:0 (18.4%), and C 17:1 ω 8c (17.4%) and the major polar lipids were observed to be an unidentified phosphoglycolipid and an unidentified glycolipid. The genomic DNA G + C content of the strain was determined to be 69.2 mol%. DNA–DNA hybridization with D . ficus showed a relatedness value of 31.5 ± 4.2%. The DNA–DNA hybridization result and the differentiating phenotypic properties clearly indicate that strain S13-1-2-1 T represents a novel species in the genus Deinococcus , for which the name Deinococcus terrigena sp. nov. is proposed. The type strain is S13-1-2-1 T (= KCTC 33939 T  = JCM 32248 T ).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>30238338</pmid><doi>10.1007/s10482-018-1167-9</doi><tpages>11</tpages></addata></record>
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subjects Alanine
Amino acids
Base Composition
Biomedical and Life Sciences
Cell Wall - chemistry
Cytosol - chemistry
Deinococcus
Deinococcus - classification
Deinococcus - genetics
Deinococcus - isolation & purification
Deinococcus - physiology
Deoxyribonucleic acid
DNA
Fatty acids
Fatty Acids - analysis
Gamma Rays
Gene sequencing
Glutamic acid
Glycine
Glycolipids - analysis
Hybridization
Hydrogen-Ion Concentration
Korea
Life Sciences
Lipids
Medical Microbiology
Menaquinones
Microbiology
New species
Nucleic Acid Hybridization
Original Paper
Ornithine
Peptidoglycan - analysis
Peptidoglycans
Phospholipids - analysis
Phylogeny
Plant Sciences
Quinones
Quinones - analysis
Radiation tolerance
RNA, Ribosomal, 16S - genetics
rRNA 16S
Sequence Homology, Nucleic Acid
Sodium chloride
Sodium Chloride - metabolism
Soil Microbiology
Soil Science & Conservation
Temperature
Ultraviolet radiation
Vitamin K 2 - analysis
γ Radiation
title Deinococcus terrigena sp. nov., a novel member of the family Deinococcaceae
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