“Swarm relaxation”: Equilibrating a large ensemble of computer simulations

. It is common practice in molecular dynamics and Monte Carlo computer simulations to run multiple, separately-initialized simulations in order to improve the sampling of independent microstates. Here we examine the utility of an extreme case of this strategy, in which we run a large ensemble of M i...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:The European physical journal. E, Soft matter and biological physics Soft matter and biological physics, 2017-11, Vol.40 (11), p.98-11, Article 98
Hauptverfasser: Malek, Shahrazad M. A., Bowles, Richard K., Saika-Voivod, Ivan, Sciortino, Francesco, Poole, Peter H.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:. It is common practice in molecular dynamics and Monte Carlo computer simulations to run multiple, separately-initialized simulations in order to improve the sampling of independent microstates. Here we examine the utility of an extreme case of this strategy, in which we run a large ensemble of M independent simulations (a “swarm”), each of which is relaxed to equilibrium. We show that if M is of order 10 3 , we can monitor the swarm’s relaxation to equilibrium, and confirm its attainment, within ∼ 10 τ ¯ , where τ ¯ is the equilibrium relaxation time. As soon as a swarm of this size attains equilibrium, the ensemble of M final microstates from each run is sufficient for the evaluation of most equilibrium properties without further sampling. This approach dramatically reduces the wall-clock time required, compared to a single long simulation, by a factor of several hundred, at the cost of an increase in the total computational effort by a small factor. It is also well suited to modern computing systems having thousands of processors, and is a viable strategy for simulation studies that need to produce high-precision results in a minimum of wall-clock time. We present results obtained by applying this approach to several test cases. Graphical abstract
ISSN:1292-8941
1292-895X
DOI:10.1140/epje/i2017-11588-2