Psedoduganella eburnea sp. nov., isolated from lagoon sediments
Strain 10R5-21 was isolated from lagoon sediments. Cells of strain 10R5-21 were Gram-reaction-negative, rod-shaped and motile by means of polar flagella. The strain was obligately aerobic and positive for catalase and oxidase activity. Strain 10R5-21 was able to grow at 10-37 ˚C (optimum 25-30 ˚C),...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2017-12, Vol.67 (12), p.5268-5272 |
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| creator | Jin, Da-Hye Subhash, Y Lee, Sang-Seob |
| description | Strain 10R5-21
was isolated from lagoon sediments. Cells of strain 10R5-21
were Gram-reaction-negative, rod-shaped and motile by means of polar flagella. The strain was obligately aerobic and positive for catalase and oxidase activity. Strain 10R5-21
was able to grow at 10-37 ˚C (optimum 25-30 ˚C), at pH 5.0-9.0 (optimum pH 6.5-7.5) and in the presence of 0-0.5 % (w/v) NaCl (optimum 0 %). C16 : 1ω7c/C16 : 1ω6c, C16 : 0 and C12 : 0 were present as predominant (>5 %) fatty acids. Q-8 was identified as the major respiratory quinone. Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were present as major polar lipids with minor amounts of unidentified aminophospholipids and unidentified aminolipids. The genomic G+C content of strain 10R5-21
was 64.1 mol%. 16S rRNA gene sequence analysis indicated that strain 10R5-21
belongs to the genus Pseudoduganella within the family Oxalobacteraceae of the class Betaproteobacteria. Strain 10R5-21
shared 98.8 % 16S rRNA gene sequence similarity with Pseudoduganella violaceinigra YIM 31327
. DNA-DNA hybridization values between strain 10R5-21
and P. violaceinigra KACC 11669
were clearly below the 70 % threshold. Distinct morphological, biochemical, chemotaxonomic and genetic differences from previously described taxa support the classification of strain 10R5-21
as a representative of a novel species in the genus Pseudoduganella, for which the name Pseudoduganella eburnea sp. nov. is proposed. The type strain is 10R5-21
(=KEMB 563-061
=JCM 31587
). |
| doi_str_mv | 10.1099/ijsem.0.002460 |
| format | Article |
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was isolated from lagoon sediments. Cells of strain 10R5-21
were Gram-reaction-negative, rod-shaped and motile by means of polar flagella. The strain was obligately aerobic and positive for catalase and oxidase activity. Strain 10R5-21
was able to grow at 10-37 ˚C (optimum 25-30 ˚C), at pH 5.0-9.0 (optimum pH 6.5-7.5) and in the presence of 0-0.5 % (w/v) NaCl (optimum 0 %). C16 : 1ω7c/C16 : 1ω6c, C16 : 0 and C12 : 0 were present as predominant (>5 %) fatty acids. Q-8 was identified as the major respiratory quinone. Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were present as major polar lipids with minor amounts of unidentified aminophospholipids and unidentified aminolipids. The genomic G+C content of strain 10R5-21
was 64.1 mol%. 16S rRNA gene sequence analysis indicated that strain 10R5-21
belongs to the genus Pseudoduganella within the family Oxalobacteraceae of the class Betaproteobacteria. Strain 10R5-21
shared 98.8 % 16S rRNA gene sequence similarity with Pseudoduganella violaceinigra YIM 31327
. DNA-DNA hybridization values between strain 10R5-21
and P. violaceinigra KACC 11669
were clearly below the 70 % threshold. Distinct morphological, biochemical, chemotaxonomic and genetic differences from previously described taxa support the classification of strain 10R5-21
as a representative of a novel species in the genus Pseudoduganella, for which the name Pseudoduganella eburnea sp. nov. is proposed. The type strain is 10R5-21
(=KEMB 563-061
=JCM 31587
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.002460</identifier><identifier>PMID: 29087279</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Geologic Sediments - microbiology ; North Carolina ; Nucleic Acid Hybridization ; Oxalobacteraceae - classification ; Oxalobacteraceae - genetics ; Oxalobacteraceae - isolation & purification ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Ubiquinone - chemistry ; Water Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2017-12, Vol.67 (12), p.5268-5272</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-102beb0ef508b040f99380ef77215babd42d416f73021b48a1362e79197aca883</citedby><cites>FETCH-LOGICAL-c335t-102beb0ef508b040f99380ef77215babd42d416f73021b48a1362e79197aca883</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29087279$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jin, Da-Hye</creatorcontrib><creatorcontrib>Subhash, Y</creatorcontrib><creatorcontrib>Lee, Sang-Seob</creatorcontrib><title>Psedoduganella eburnea sp. nov., isolated from lagoon sediments</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Strain 10R5-21
was isolated from lagoon sediments. Cells of strain 10R5-21
were Gram-reaction-negative, rod-shaped and motile by means of polar flagella. The strain was obligately aerobic and positive for catalase and oxidase activity. Strain 10R5-21
was able to grow at 10-37 ˚C (optimum 25-30 ˚C), at pH 5.0-9.0 (optimum pH 6.5-7.5) and in the presence of 0-0.5 % (w/v) NaCl (optimum 0 %). C16 : 1ω7c/C16 : 1ω6c, C16 : 0 and C12 : 0 were present as predominant (>5 %) fatty acids. Q-8 was identified as the major respiratory quinone. Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were present as major polar lipids with minor amounts of unidentified aminophospholipids and unidentified aminolipids. The genomic G+C content of strain 10R5-21
was 64.1 mol%. 16S rRNA gene sequence analysis indicated that strain 10R5-21
belongs to the genus Pseudoduganella within the family Oxalobacteraceae of the class Betaproteobacteria. Strain 10R5-21
shared 98.8 % 16S rRNA gene sequence similarity with Pseudoduganella violaceinigra YIM 31327
. DNA-DNA hybridization values between strain 10R5-21
and P. violaceinigra KACC 11669
were clearly below the 70 % threshold. Distinct morphological, biochemical, chemotaxonomic and genetic differences from previously described taxa support the classification of strain 10R5-21
as a representative of a novel species in the genus Pseudoduganella, for which the name Pseudoduganella eburnea sp. nov. is proposed. The type strain is 10R5-21
(=KEMB 563-061
=JCM 31587
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Geologic Sediments - microbiology</subject><subject>North Carolina</subject><subject>Nucleic Acid Hybridization</subject><subject>Oxalobacteraceae - classification</subject><subject>Oxalobacteraceae - genetics</subject><subject>Oxalobacteraceae - isolation & purification</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Ubiquinone - chemistry</subject><subject>Water Microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kDtPwzAUhS0EolBYGZFHBhKu7SS2J4QqXlIlGGC27OSmSpXExU6Q-PektHS6D51zdPQRcsUgZaD1XbOO2KWQAvCsgCNyxrKiSHIQ2fFh58WMnMe4BpgeAKdkxjUoyaU-I_fvEStfjSvbY9taim4MPVoaNynt_Xd6S5voWztgRevgO9ralfc9nUxNh_0QL8hJbduIl_s5J59Pjx-Ll2T59vy6eFgmpRD5kDDgDh1gnYNykEGttVDTKSVnubOuyniVsaKWAjhzmbJMFBylZlra0iol5uRml7sJ_mvEOJiuieW2co9-jIbpXOUiVxImabqTlsHHGLA2m9B0NvwYBmYLzfxBM2B20CbD9T57dB1WB_k_JfELbMRnZA</recordid><startdate>201712</startdate><enddate>201712</enddate><creator>Jin, Da-Hye</creator><creator>Subhash, Y</creator><creator>Lee, Sang-Seob</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201712</creationdate><title>Psedoduganella eburnea sp. nov., isolated from lagoon sediments</title><author>Jin, Da-Hye ; Subhash, Y ; Lee, Sang-Seob</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-102beb0ef508b040f99380ef77215babd42d416f73021b48a1362e79197aca883</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Geologic Sediments - microbiology</topic><topic>North Carolina</topic><topic>Nucleic Acid Hybridization</topic><topic>Oxalobacteraceae - classification</topic><topic>Oxalobacteraceae - genetics</topic><topic>Oxalobacteraceae - isolation & purification</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Ubiquinone - chemistry</topic><topic>Water Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jin, Da-Hye</creatorcontrib><creatorcontrib>Subhash, Y</creatorcontrib><creatorcontrib>Lee, Sang-Seob</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jin, Da-Hye</au><au>Subhash, Y</au><au>Lee, Sang-Seob</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Psedoduganella eburnea sp. nov., isolated from lagoon sediments</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2017-12</date><risdate>2017</risdate><volume>67</volume><issue>12</issue><spage>5268</spage><epage>5272</epage><pages>5268-5272</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Strain 10R5-21
was isolated from lagoon sediments. Cells of strain 10R5-21
were Gram-reaction-negative, rod-shaped and motile by means of polar flagella. The strain was obligately aerobic and positive for catalase and oxidase activity. Strain 10R5-21
was able to grow at 10-37 ˚C (optimum 25-30 ˚C), at pH 5.0-9.0 (optimum pH 6.5-7.5) and in the presence of 0-0.5 % (w/v) NaCl (optimum 0 %). C16 : 1ω7c/C16 : 1ω6c, C16 : 0 and C12 : 0 were present as predominant (>5 %) fatty acids. Q-8 was identified as the major respiratory quinone. Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were present as major polar lipids with minor amounts of unidentified aminophospholipids and unidentified aminolipids. The genomic G+C content of strain 10R5-21
was 64.1 mol%. 16S rRNA gene sequence analysis indicated that strain 10R5-21
belongs to the genus Pseudoduganella within the family Oxalobacteraceae of the class Betaproteobacteria. Strain 10R5-21
shared 98.8 % 16S rRNA gene sequence similarity with Pseudoduganella violaceinigra YIM 31327
. DNA-DNA hybridization values between strain 10R5-21
and P. violaceinigra KACC 11669
were clearly below the 70 % threshold. Distinct morphological, biochemical, chemotaxonomic and genetic differences from previously described taxa support the classification of strain 10R5-21
as a representative of a novel species in the genus Pseudoduganella, for which the name Pseudoduganella eburnea sp. nov. is proposed. The type strain is 10R5-21
(=KEMB 563-061
=JCM 31587
).</abstract><cop>England</cop><pmid>29087279</pmid><doi>10.1099/ijsem.0.002460</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Geologic Sediments - microbiology North Carolina Nucleic Acid Hybridization Oxalobacteraceae - classification Oxalobacteraceae - genetics Oxalobacteraceae - isolation & purification Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Ubiquinone - chemistry Water Microbiology |
| title | Psedoduganella eburnea sp. nov., isolated from lagoon sediments |
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