Genetic variability in Gymnodiniaceae ITS regions: implications for species identification and phylogenetic analysis

The internal transcribed spacer (ITS) regions and 5.8S rRNA genes from several strains of toxic Gymnodiniaceae were sequenced and subjected to phylogenetic analysis with other Gymnodiniaceae species. Sequence comparisons showed that high sequence divergence existed in Gymnodiniaceae, especially in the genus Gymnodinium. The amplicons of the ITS regions from Amphidinium and Gyrodinium species were 438–439 and 604–605 bp, respectively, and those of the Gymnodinium species ranged from 575 to 615 bp. The mean distance value within Gymnodinium, calculated from the ITS sequence, was 0.68827 (range: 0–0.92323), 0.11342 for Amphidinium (range: 0.00467–0.17120) and 0.2005 for Karenia (range: 0.00521–0.29971). Low distance values were found within the species Gyrodinium instriatum (