Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s
A total of 2120 nucleotide sequences of the NS5b region of HCV subtype 3a were analysed, including 310 strains derived from former republics of the USSR (Azerbaijan, Estonia, Lithuania, Russia, Tajikistan and Uzbekistan). Among the viral isolates collected from former regions of the Soviet Union, 29...
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| Veröffentlicht in: | Journal of general virology 2017-08, Vol.98 (8), p.2079-2087 |
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| container_issue | 8 |
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| container_title | Journal of general virology |
| container_volume | 98 |
| creator | Manuylov, Victor A Chub, Elena V Kichatova, Vera S Soboleva, Natalya V Isaeva, Olga V Zamyatnin, Jr, Andrey A Netesov, Sergey V |
| description | A total of 2120 nucleotide sequences of the NS5b region of HCV subtype 3a were analysed, including 310 strains derived from former republics of the USSR (Azerbaijan, Estonia, Lithuania, Russia, Tajikistan and Uzbekistan). Among the viral isolates collected from former regions of the Soviet Union, 294 strains formed 3 sustained phylogenetic clusters, with each having a common origin. Phylodynamic analysis demonstrated that the most recent common ancestors of the current strains inside the three clusters were introduced into the USSR population in 1981±1, 1984±2 and 1985±2, respectively (the confidence intervals were calculated using Student's t-distribution, P |
| doi_str_mv | 10.1099/jgv.0.000878 |
| format | Article |
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Among the viral isolates collected from former regions of the Soviet Union, 294 strains formed 3 sustained phylogenetic clusters, with each having a common origin. Phylodynamic analysis demonstrated that the most recent common ancestors of the current strains inside the three clusters were introduced into the USSR population in 1981±1, 1984±2 and 1985±2, respectively (the confidence intervals were calculated using Student's t-distribution, P<0.05). The time estimation obtained for HCV subtype 3a correlated well with the historical and epidemiological context of this period, and in particular with the start of widespread injection drug use in the USSR in the first half of the 1980s.</description><identifier>ISSN: 0022-1317</identifier><identifier>EISSN: 1465-2099</identifier><identifier>DOI: 10.1099/jgv.0.000878</identifier><identifier>PMID: 28742003</identifier><language>eng</language><publisher>England</publisher><subject>Genotype ; Hepacivirus - classification ; Hepacivirus - genetics ; Hepacivirus - isolation & purification ; Hepatitis C - epidemiology ; Hepatitis C - virology ; Humans ; Molecular Epidemiology ; Phylogeny ; USSR - epidemiology</subject><ispartof>Journal of general virology, 2017-08, Vol.98 (8), p.2079-2087</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c329t-24da6f01a16d92339bcada2662b646becc1ce7ea685f1b2c7fa0339bef90fd3b3</citedby><cites>FETCH-LOGICAL-c329t-24da6f01a16d92339bcada2662b646becc1ce7ea685f1b2c7fa0339bef90fd3b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28742003$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Manuylov, Victor A</creatorcontrib><creatorcontrib>Chub, Elena V</creatorcontrib><creatorcontrib>Kichatova, Vera S</creatorcontrib><creatorcontrib>Soboleva, Natalya V</creatorcontrib><creatorcontrib>Isaeva, Olga V</creatorcontrib><creatorcontrib>Zamyatnin, Jr, Andrey A</creatorcontrib><creatorcontrib>Netesov, Sergey V</creatorcontrib><title>Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s</title><title>Journal of general virology</title><addtitle>J Gen Virol</addtitle><description>A total of 2120 nucleotide sequences of the NS5b region of HCV subtype 3a were analysed, including 310 strains derived from former republics of the USSR (Azerbaijan, Estonia, Lithuania, Russia, Tajikistan and Uzbekistan). Among the viral isolates collected from former regions of the Soviet Union, 294 strains formed 3 sustained phylogenetic clusters, with each having a common origin. Phylodynamic analysis demonstrated that the most recent common ancestors of the current strains inside the three clusters were introduced into the USSR population in 1981±1, 1984±2 and 1985±2, respectively (the confidence intervals were calculated using Student's t-distribution, P<0.05). The time estimation obtained for HCV subtype 3a correlated well with the historical and epidemiological context of this period, and in particular with the start of widespread injection drug use in the USSR in the first half of the 1980s.</description><subject>Genotype</subject><subject>Hepacivirus - classification</subject><subject>Hepacivirus - genetics</subject><subject>Hepacivirus - isolation & purification</subject><subject>Hepatitis C - epidemiology</subject><subject>Hepatitis C - virology</subject><subject>Humans</subject><subject>Molecular Epidemiology</subject><subject>Phylogeny</subject><subject>USSR - epidemiology</subject><issn>0022-1317</issn><issn>1465-2099</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kL1PwzAQRy0EoqWwMSOPDKScP-rEI6qAgiohUTpbtnOBVCkJdlLU_55UbZnuJ93TGx4h1wzGDLS-X31uxjAGgCzNTsiQSTVJeP84JUMAzhMmWDogFzGuAJiUk_ScDHiWSg4ghuR1ho1ty7aMdEo3ZegijZ1rtw1SYemvjbT8bkOddx7zftL2C-lysXg_brSh2lKmM4iX5KywVcSrwx2R5dPjx3SWzN-eX6YP88QLrtuEy9yqAphlKtdcCO28zS1XijsllUPvmccUrcomBXPcp4WFHYWFhiIXTozI7d7bhPqnw9iadRk9VpX9xrqLhvVWBmkmdY_e7VEf6hgDFqYJ5dqGrWFgdvVMX8-A2dfr8ZuDuXNrzP_hYy7xB_pWaas</recordid><startdate>201708</startdate><enddate>201708</enddate><creator>Manuylov, Victor A</creator><creator>Chub, Elena V</creator><creator>Kichatova, Vera S</creator><creator>Soboleva, Natalya V</creator><creator>Isaeva, Olga V</creator><creator>Zamyatnin, Jr, Andrey A</creator><creator>Netesov, Sergey V</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201708</creationdate><title>Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s</title><author>Manuylov, Victor A ; Chub, Elena V ; Kichatova, Vera S ; Soboleva, Natalya V ; Isaeva, Olga V ; Zamyatnin, Jr, Andrey A ; Netesov, Sergey V</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c329t-24da6f01a16d92339bcada2662b646becc1ce7ea685f1b2c7fa0339bef90fd3b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Genotype</topic><topic>Hepacivirus - classification</topic><topic>Hepacivirus - genetics</topic><topic>Hepacivirus - isolation & purification</topic><topic>Hepatitis C - epidemiology</topic><topic>Hepatitis C - virology</topic><topic>Humans</topic><topic>Molecular Epidemiology</topic><topic>Phylogeny</topic><topic>USSR - epidemiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Manuylov, Victor A</creatorcontrib><creatorcontrib>Chub, Elena V</creatorcontrib><creatorcontrib>Kichatova, Vera S</creatorcontrib><creatorcontrib>Soboleva, Natalya V</creatorcontrib><creatorcontrib>Isaeva, Olga V</creatorcontrib><creatorcontrib>Zamyatnin, Jr, Andrey A</creatorcontrib><creatorcontrib>Netesov, Sergey V</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of general virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Manuylov, Victor A</au><au>Chub, Elena V</au><au>Kichatova, Vera S</au><au>Soboleva, Natalya V</au><au>Isaeva, Olga V</au><au>Zamyatnin, Jr, Andrey A</au><au>Netesov, Sergey V</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s</atitle><jtitle>Journal of general virology</jtitle><addtitle>J Gen Virol</addtitle><date>2017-08</date><risdate>2017</risdate><volume>98</volume><issue>8</issue><spage>2079</spage><epage>2087</epage><pages>2079-2087</pages><issn>0022-1317</issn><eissn>1465-2099</eissn><abstract>A total of 2120 nucleotide sequences of the NS5b region of HCV subtype 3a were analysed, including 310 strains derived from former republics of the USSR (Azerbaijan, Estonia, Lithuania, Russia, Tajikistan and Uzbekistan). 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| ispartof | Journal of general virology, 2017-08, Vol.98 (8), p.2079-2087 |
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| language | eng |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Genotype Hepacivirus - classification Hepacivirus - genetics Hepacivirus - isolation & purification Hepatitis C - epidemiology Hepatitis C - virology Humans Molecular Epidemiology Phylogeny USSR - epidemiology |
| title | Hepatitis C virus subtype 3a was introduced in the USSR in the early 1980s |
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