Interfacial nucleic acid chemistry studied by acoustic shear wave propagation

Acoustic wave devices have continued to gain attention as biosensor structures because of their relative ease of operation and sensitivity to interfacial biochemical events. In the present paper, we review the use of the thickness-shear mode device for the label-free detection of processes involving nucleic acid moieties that are imposed at the sensor–liquid interface. Following a concise discussion of the theory and technology connected to the operation of the sensor in liquids, we outline a number of protocols that have been adopted for the attachment of oligonucleotides to sensor surfaces, many of which have been employed in ultrasonic biosensing. The various categories of applications are then surveyed in some detail. By far, the largest group is the study of duplex formation at the sensor surface, involving a compendium of experiments involving complementary and mismatched sequences. Considerably less attention has been paid to the detection of interaction of surface-bound nucleic acids with small molecules such as specific-binding peptides and drugs. A comprehensive appraisal of the literature in this field strongly suggests that acoustic coupling phenomena are particularly sensitive to interfacial physical chemistry. Accordingly, acoustic shear wave technology offers unique advantages over other sensor configurations because of its ability to produce multidimensional information through the recording of various parameters obtained from acoustic network analysis.