CloudPhylo: a fast and scalable tool for phylogeny reconstruction

Phylogeny reconstruction is fundamentally crucial for molecular evolutionary studies but remains computationally challenging. Here we present CloudPhylo, a tool built on Spark that is capable of processing large-scale datasets for phylogeny reconstruction. As testified on empirical data, CloudPhylo...

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Veröffentlicht in:Bioinformatics (Oxford, England) England), 2017-02, Vol.33 (3), p.438-440
Hauptverfasser: Xu, Xingjian, Ji, Zhaohua, Zhang, Zhang
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Sprache:eng
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Zusammenfassung:Phylogeny reconstruction is fundamentally crucial for molecular evolutionary studies but remains computationally challenging. Here we present CloudPhylo, a tool built on Spark that is capable of processing large-scale datasets for phylogeny reconstruction. As testified on empirical data, CloudPhylo is well suited for big data analysis, achieving high efficiency and good scalability on phylogenetic tree inference. https://github.com/XingjianXu/cloudphylo zhangzhang@big.ac.cn Supplementary data are available at Bioinformatics online.
ISSN:1367-4803
1367-4811
DOI:10.1093/bioinformatics/btw645