Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets

Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets

We developed the cloud-based MOTIFSIM on Amazon Web Services (AWS) cloud. The tool is an extended version from our web-based tool version 2.0, which was developed based on a novel algorithm for detecting similarity in multiple DNA motif data sets. This cloud-based version further allows researchers...

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Veröffentlicht in:Journal of computational biology 2017-05, Vol.24 (5), p.450-459
Hauptverfasser: Tran, Ngoc Tam L, Huang, Chun-Hsi
Format: Artikel
Sprache:eng
Schlagworte:
Algorithms
Cloud Computing
Databases, Genetic
DNA - chemistry
DNA - genetics
Nucleotide Motifs
Sequence Analysis, DNA - methods
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Zusammenfassung:We developed the cloud-based MOTIFSIM on Amazon Web Services (AWS) cloud. The tool is an extended version from our web-based tool version 2.0, which was developed based on a novel algorithm for detecting similarity in multiple DNA motif data sets. This cloud-based version further allows researchers to exploit the computing resources available from AWS to detect similarity in multiple large-scale DNA motif data sets resulting from the next-generation sequencing technology. The tool is highly scalable with expandable AWS.
ISSN:1557-8666
1557-8666
DOI:10.1089/cmb.2016.0080