Can Simulations and Modeling Decipher NMR Data for Conformational Equilibria? Arginine–Vasopressin

Arginine vasopressin (AVP) has been suggested by molecular-dynamics (MD) simulations to exist as a mixture of conformations in solution. The 1H and 13C NMR chemical shifts of AVP in solution have been calculated for this conformational ensemble of ring conformations (identified from a 23 μs molecula...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of chemical information and modeling 2016-09, Vol.56 (9), p.1798-1807
Hauptverfasser: Haensele, Elke, Saleh, Noureldin, Read, Christopher M, Banting, Lee, Whitley, David C, Clark, Timothy
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:Arginine vasopressin (AVP) has been suggested by molecular-dynamics (MD) simulations to exist as a mixture of conformations in solution. The 1H and 13C NMR chemical shifts of AVP in solution have been calculated for this conformational ensemble of ring conformations (identified from a 23 μs molecular-dynamics simulation). The relative free energies of these conformations were calculated using classical metadynamics simulations in explicit water. Chemical shifts for representative conformations were calculated using density-functional theory. Comparison with experiment and analysis of the results suggests that the 1H chemical shifts are most useful for assigning equilibrium concentrations of the conformations in this case. 13C chemical shifts distinguish less clearly between conformations, and the distances calculated from the nuclear Overhauser effect do not allow the conformations to be assigned clearly. The 1H chemical shifts can be reproduced with a standard error of less than 0.24 ppm (
ISSN:1549-9596
1549-960X
DOI:10.1021/acs.jcim.6b00344