Metabolic responses of CHO cells to limitation of key amino acids

ABSTRACT Chinese hamster ovary (CHO) cells are the predominant host for production of therapeutic glycoproteins. In particular, the glutamine‐synthetase (GS) expression system has been widely used in the biopharmaceutical industry for efficient selection of high‐yielding clones. However, much remains unclear on how metabolic wiring affects culture performance. For instance, asparagine and serine have been observed to be the largest nitrogen sources taken up by GS‐CHO cells, but their roles in biosynthesis and energy generation are poorly understood. In this work, a comprehensive profiling of extracellular metabolites coupled with an analysis of intracellular label distributions after 1‐13C‐pyruvate supplementation were used to trace metabolic rearrangements in different scenarios of asparagine and serine availability. The absence of asparagine in the medium caused growth arrest, and was associated with a dramatic increase in pyruvate uptake, a higher ratio of pyruvate carboxylation to dehydrogenation and an inability for de novo asparagine synthesis. The release of ammonia and amino acids such as aspartate, glutamate, and alanine were deeply impacted. This confirms asparagine to be essential for these GS‐CHO cells as the main source of intracellular nitrogen as well as having an important anaplerotic role in TCA cycle activity. In turn, serine unavailability also negatively affected culture growth while triggering its de novo synthesis, confirmed by label incorporation coming from pyruvate, and reduced glycine and formate secretion congruent with its role as a precursor in the metabolism of one‐carbon units. Overall, these results unfold important insights into GS‐CHO cells metabolism that lay a clearer basis for fine‐tuning bioprocess optimization. Biotechnol. Bioeng. 2014;111: 2095–2106. © 2014 Wiley Periodicals, Inc. Metabolomic and label distribution profilling after 1‐13C‐pyruvate supplementation allowed tracing metabolic rearrangements of GS‐CHO cells under asparagine or serine limitation. Asparagine was confirmed essential for cell growth and their main nitrogen source, leading to alanine and ammonia buildup. Moreover, increased pyruvate uptake under asparagine deprivation was metabolized preferentially through pyruvate carboxylase (PC), indicating an anaplerotic role of this amino acid. Serine deprivation affected cell growth but activated its synthesis, while halting excess production of glycine and formate in connection with onecarbon units' meta